pyhf
pyhf: pure-Python implementation of HistFactory statistical models - Published in JOSS (2021)
Surprise
Surprise: A Python library for recommender systems - Published in JOSS (2020)
Pubmed Parser
Pubmed Parser: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset XML Dataset - Published in JOSS (2020)
automata
automata: A Python package for simulating and manipulating automata - Published in JOSS (2023)
PyPortfolioOpt
PyPortfolioOpt: portfolio optimization in Python - Published in JOSS (2021)
MQT Core
MQT Core: The Backbone of the Munich Quantum Toolkit (MQT) - Published in JOSS (2025)
DendroPy 5
DendroPy 5: a mature Python library for phylogenetic computing - Published in JOSS (2024)
graphlayouts
graphlayouts: Layout algorithms for network visualizations in R - Published in JOSS (2023)
ChemPy
ChemPy: A package useful for chemistry written in Python - Published in JOSS (2018)
TorchGAN
TorchGAN: A Flexible Framework for GAN Training and Evaluation - Published in JOSS (2021)
mlpack 4
mlpack 4: a fast, header-only C++ machine learning library - Published in JOSS (2023)
khmer release v2.1
khmer release v2.1: software for biological sequence analysis - Published in JOSS (2017)
libCEED
libCEED: Fast algebra for high-order element-based discretizations - Published in JOSS (2021)
HyperNetX
HyperNetX: A Python package for modeling complex network data as hypergraphs - Published in JOSS (2024)
NiaPy
NiaPy: Python microframework for building nature-inspired algorithms - Published in JOSS (2018)
Phonemizer
Phonemizer: Text to Phones Transcription for Multiple Languages in Python - Published in JOSS (2021)
emcee v3
emcee v3: A Python ensemble sampling toolkit for affine-invariant MCMC - Published in JOSS (2019)
htmldate
htmldate: A Python package to extract publication dates from web pages - Published in JOSS (2020)
bíogo/hts
bíogo/hts: high throughput sequence handling for the Go language - Published in JOSS (2017)
Pingouin
Pingouin: statistics in Python - Published in JOSS (2018)