yadg
yadg: yet another datagram - Published in JOSS (2022)
eddy
eddy: Extracting Protoplanetary Disk Dynamics with Python - Published in JOSS (2019)
DeepReg
DeepReg: a deep learning toolkit for medical image registration - Published in JOSS (2020)
piglot
piglot: an Open-source Package for Derivative-free Optimisation of Numerical Responses - Published in JOSS (2024)
Generating fragment density plots in R/Bioconductor with VplotR
Generating fragment density plots in R/Bioconductor with VplotR - Published in JOSS (2021)
rr2
rr2: An R package to calculate $R^2$s for regression models - Published in JOSS (2018)
ParaMonte
ParaMonte: A high-performance serial/parallel Monte Carlo simulation library for C, C++, Fortran - Published in JOSS (2021)
spINAR
spINAR: An R Package for Semiparametric and Parametric Estimation and Bootstrapping of Integer-Valued Autoregressive (INAR) Models - Published in JOSS (2024)
rf
rf: Receiver function calculation in seismology - Published in JOSS (2020)
MapReader
MapReader: Open software for the visual analysis of maps - Published in JOSS (2024)
Pyret
Pyret: A Python package for analysis of neurophysiology data - Published in JOSS (2017)
ComplexRegions.jl
ComplexRegions.jl: A Julia package for regions in the complex plane - Published in JOSS (2019)
Fastsubtrees
Fastsubtrees: simple and efficient subtrees extractions in Python with applications to NCBI taxonomy - Published in JOSS (2022)
ddtlcm
ddtlcm: An R package for overcoming weak separation in Bayesian latent class analysis via tree-regularization - Published in JOSS (2024)
WordTokenizers.jl
WordTokenizers.jl: Basic tools for tokenizing natural language in Julia - Published in JOSS (2020)
Bluebonnet
Bluebonnet: Scaling solutions for production analysis from unconventional oil and gas wells - Published in JOSS (2023)
solids4foam
solids4foam: A toolbox for performing solid mechanics and fluid-solid interaction simulations in OpenFOAM - Published in JOSS (2025)
msmhelper
msmhelper: A Python package for Markov state modeling of protein dynamics - Published in JOSS (2023)
Metaheuristics
Metaheuristics: A Julia Package for Single- and Multi-Objective Optimization - Published in JOSS (2022)