Multilocus sequence typing by blast from de novo assemblies against PubMLST
Multilocus sequence typing by blast from de novo assemblies against PubMLST - Published in JOSS (2016)
ewstools
ewstools: A Python package for early warning signals of bifurcations in time series data - Published in JOSS (2023)
CurvilinearGrids.jl
CurvilinearGrids.jl: A Julia package for curvilinear coordinate transformations - Published in JOSS (2024)
piar
piar: Price Index Aggregation in R - Published in JOSS (2024)
pyndl
pyndl: Naïve Discriminative Learning in Python - Published in JOSS (2022)
TransitionsInTimeseries.jl
TransitionsInTimeseries.jl: A performant, extensible and reliable software for reproducible detection and prediction of transitions in timeseries - Published in JOSS (2024)
(py)oscode
(py)oscode: fast solutions of oscillatory ODEs - Published in JOSS (2020)
Connectome Mapper 3
Connectome Mapper 3: A Flexible and Open-Source Pipeline Software for Multiscale Multimodal Human Connectome Mapping - Published in JOSS (2022)
AIBECS.jl
AIBECS.jl: A tool for exploring global marine biogeochemical cycles. - Published in JOSS (2022)
BlueCelluLab
BlueCelluLab: Biologically Detailed Neural Network Experimentation API - Published in JOSS (2024)
cvCovEst
cvCovEst: Cross-validated covariance matrix estimator selection and evaluation in R - Published in JOSS (2021)
Lumen
Lumen: A software for the interactive visualization of probabilistic models together with data - Published in JOSS (2021)
servir-aces
servir-aces: A Python Package for Training Machine Learning Models for Remote Sensing Applications - Published in JOSS (2024)
bsym
bsym: A basic symmetry module - Published in JOSS (2017)
DetecTree
DetecTree: Tree detection from aerial imagery in Python - Published in JOSS (2020)
AeroAcoustics.jl
AeroAcoustics.jl: A Julia package for aeroacoustics - Published in JOSS (2024)
dtrackr
dtrackr: An R package for tracking the provenance of data - Published in JOSS (2022)
The Pencil Code, a modular MPI code for partial differential equations and particles
The Pencil Code, a modular MPI code for partial differential equations and particles: multipurpose and multiuser-maintained - Published in JOSS (2021)
PlantSimEngine
PlantSimEngine: A Simulation Engine For The Soil-Plant-Atmosphere System - Published in JOSS (2023)