https://github.com/animesh/covid-sim • Science 23%

This is the COVID-19 CovidSim microsimulation model developed by the MRC Centre for Global Infectious Disease Analysis hosted at Imperial College, London.

https://github.com/animesh/course-materials • Science 23%

https://github.com/animesh/covid-chestxray-dataset • Science 23%

We are building an open database of COVID-19 cases with chest X-ray or CT images.

https://github.com/animesh/cmgm • Science 13%

Comprehensive mouse gut metagenome collection

https://github.com/animesh/clusterprofiler • Science 13%

:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters

https://github.com/animesh/ci-analysis-minimal-example • Science 10%

A minimal example of a data analysis using continuous integration via Github actions

https://github.com/animesh/cfc • Science 10%

Closed-form Continuous-time Neural Networks

https://github.com/animesh/cellpypes • Science 23%

Cell type pipes for R

https://github.com/animesh/casanovo • Science 23%

De Novo Mass Spectrometry Peptide Sequencing with a Transformer Model

https://github.com/animesh/bulk-rnaseq • Science 13%

Bulk RNA-seq analysis.

https://github.com/animesh/breast_cancer_classifier • Science 10%

Deep Neural Networks Improve Radiologists' Performance in Breast Cancer Screening

https://github.com/animesh/bio_embeddings • Science 23%

Get protein embeddings from protein sequences

https://github.com/animesh/biotranslatorproject • Science 10%

https://github.com/animesh/biogpt • Science 13%

https://github.com/animesh/biobert • Science 10%

BioBERT: a pre-trained biomedical language representation model for biomedical text mining

https://github.com/animesh/bgwas • Science 23%

R package to perform Bayesian Genome-Wide Association Studies

https://github.com/animesh/bedwars • Science 23%

https://github.com/animesh/banksy • Science 23%

BANKSY: spatial clustering

https://github.com/animesh/awesome-compbio-chatgpt • Science 10%

An awesome repository of community-curated applications of ChatGPT and other LLMs im computational biology

https://github.com/animesh/arioc • Science 13%

Arioc: GPU-accelerated DNA short-read alignment