https://github.com/bioarchlinux/bioarchlinux-tools
Tools for maintaining BioArchLinux
https://github.com/bioatmosphere/e3sm
Energy Exascale Earth System Model source code. NOTE: use "maint" branches for your work. Head of master is not validated.
https://github.com/bioatmosphere/pytorch-generative
Easy generative modeling in PyTorch.
https://github.com/bioatmosphere/generative-ecosystem-model
GEM: Generative Ecosystem Model
https://github.com/bioatmosphere/uvafmevoc2017
Scripts and Data underlying the 2017 Ecological Modelling paper on UVAFME-VOC.
https://github.com/bioatmosphere/fates
repository for the Functionally Assembled Terrestrial Ecosystem Simulator (FATES)
https://github.com/bioatmosphere/microbiome-climate-gradient
Application of DEMENTpy to a climate gradient in Southern California
https://github.com/biocommons/uta
Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image
https://github.com/biocommons/anyvar
[in development] Proof-of-Concept variation translation, validation, and registration service
https://github.com/biocommons/mirrors-ncbi
Makefile (of all things) to space-efficiently mirror selected NCBI resources
https://github.com/biocomputingup/cagi-p16-assessment
https://genomeinterpretation.org/content/predict-how-variants-p16-tumor-suppressor-protein-affect-cell-proliferation
https://github.com/biocomputingup/geometre_results
GeomeTRe calculation results for STRPs from RepeatsDB v4, including large-scale and statistical analyses. Reproducible Jupyter Notebook scripts are available in this repository.