MicroBenthos
MicroBenthos: a modeling framework for microbial benthic ecology - Published in JOSS (2018)
LGP
LGP: A robust Linear Genetic Programming implementation on the JVM using Kotlin. - Published in JOSS (2019)
Learning Simulator
Learning Simulator: A simulation software for animal and human learning - Published in JOSS (2021)
flodym: A Python package for dynamic material flow analysis
flodym: A Python package for dynamic material flow analysis - Published in JOSS (2026)
ParticleTracker
ParticleTracker: a gui based particle tracking software - Published in JOSS (2021)
Dryft
Dryft: A Python and MATLAB package to correct drifting ground reaction force signals during treadmill running - Published in JOSS (2019)
Quilë
Quilë: C++ genetic algorithms scientific library - Published in JOSS (2023)
mhealthtools
mhealthtools: A Modular R Package for Extracting Features from Mobile and Wearable Sensor Data - Published in JOSS (2020)
MM-PoE
MM-PoE: Multiple Choice Reasoning via. Process of Elimination using Multi-Modal Models - Published in JOSS (2025)
acronym
acronym: An Automatic Reduction Pipeline for Astronomical Images - Published in JOSS (2017)
CycloPhaser
CycloPhaser: A Python Package for Detecting Extratropical Cyclone Life Cycles - Published in JOSS (2025)
MetObs - a Python toolkit for using non-traditional meteorological observations
MetObs - a Python toolkit for using non-traditional meteorological observations - Published in JOSS (2024)
psychTestR
psychTestR: An R package for designing and conducting behavioural psychological experiments - Published in JOSS (2020)
Open-Unmix - A Reference Implementation for Music Source Separation
Open-Unmix - A Reference Implementation for Music Source Separation - Published in JOSS (2019)
The DynaGUI package
The DynaGUI package - Published in JOSS (2020)
mnt.pyfiction
An open-source design automation framework for Field-coupled Nanotechnologies
dtaidistance
Time series distances: Dynamic Time Warping (fast DTW implementation in C)
Phylogemetric
Phylogemetric: A Python library for calculating phylogenetic network metrics - Published in JOSS (2016)
deepmd-kit
A deep learning package for many-body potential energy representation and molecular dynamics