whampy
whampy: Python Package to Interact with, Visualize, and Analyze the Wisconsin H-Alpha Mapper - Sky Survey - Published in JOSS (2019)
LinguiPhyR
LinguiPhyR: A Package for Linguistic Phylogenetic Analysis in R - Published in JOSS (2024)
Sinaps
Sinaps: A Python library to simulate voltage dynamics and ionic electrodiffusion in neurons - Published in JOSS (2022)
NEMESISPY
NEMESISPY: A Python package for simulating and retrieving exoplanetary spectra - Published in JOSS (2024)
cosasi
cosasi: Graph Diffusion Source Inference in Python - Published in JOSS (2022)
atems
atems: Analysis tools for TEM images of carbonaceous particles - Published in JOSS (2024)
SenAOReFoc
SenAOReFoc: A Closed-Loop Sensorbased Adaptive Optics and Remote Focusing Control Software - Published in JOSS (2022)
directChillFoam
directChillFoam: an OpenFOAM application for direct-chill casting - Published in JOSS (2023)
pyBEMT
pyBEMT: An implementation of the Blade Element Momentum Theory in Python - Published in JOSS (2020)
EdgeVPN.io
EdgeVPN.io: Seamless Software-defined Layer 2 Virtual Networking for Edge Computing - Published in JOSS (2024)
DeepSynth
DeepSynth: Scaling Neural Program Synthesis with Distribution-based Search - Published in JOSS (2022)
NLMech
NLMech: Implementation of finite difference/meshfree discretization of nonlocal fracture models - Published in JOSS (2021)
QMRTools
QMRTools: a Mathematica toolbox for quantitative MRI analysis. - Published in JOSS (2019)
DBSP_DRP
DBSP_DRP: A Python package for automated spectroscopic data reduction of DBSP data - Published in JOSS (2022)
AtomNeb Python Package, an addendum to AtomNeb
AtomNeb Python Package, an addendum to AtomNeb: IDL Library for Atomic Data of Ionized Nebulae - Published in JOSS (2020)
pypots
A Python toolkit/library for reality-centric machine/deep learning and data mining on partially-observed time series, including SOTA neural network models for scientific analysis tasks of imputation/classification/clustering/forecasting/anomaly detection/cleaning on incomplete industrial (irregularly-sampled) multivariate TS with NaN missing values
UFig v1: The ultra-fast image generator
UFig v1: The ultra-fast image generator - Published in JOSS (2025)
xgboost
Scalable, Portable and Distributed Gradient Boosting (GBDT, GBRT or GBM) Library, for Python, R, Java, Scala, C++ and more. Runs on single machine, Hadoop, Spark, Dask, Flink and DataFlow
pysrim
pysrim: Automation, Analysis, and Plotting of SRIM Calculations - Published in JOSS (2018)
Shiny tools for management rules
Shiny tools for management rules: interactive applications that aid in conservation strategies for North Atlantic right whales - Published in JOSS (2023)