Projects

Updated 9 months ago

ampliseq • Rank 9.1 • Science 77%

Amplicon sequencing analysis workflow using DADA2 and QIIME2

16s 18s amplicon-sequencing edna illumina iontorrent its metabarcoding metagenomics microbiome nextflow nf-core pacbio pipeline qiime2 rrna taxonomic-classification taxonomic-profiling workflow

Updated 9 months ago

obitools_workflow • Science 67%

A snakemake workflow based on the obitools suite of programs, that analyzes DNA metabarcoding data.

bioinformatics-pipeline edna edna-pipeline metabarcoding

Updated 9 months ago

detaxizer • Science 67%

A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.

de-identification decontamination edna fastq filter long-reads metabarcoding metagenomics microbiome nanopore nextflow nf-core pipeline short-reads shotgun taxonomic-classification taxonomic-profiling workflow

ecosyste.ms

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Open Source Science

ampliseq • Rank 9.1 • Science 77%

obitools_workflow • Science 67%

detaxizer • Science 67%