amplicon amplicon-sequencing biodiversity-informatics ecology illumina metabarcoding ngs-analysis package r r-package visualization

16s 18s amplicon-sequencing edna illumina iontorrent its metabarcoding metagenomics microbiome nextflow nf-core pacbio pipeline qiime2 rrna taxonomic-classification taxonomic-profiling workflow

amplicon bioinformatics chimera clustering fasta fastq metabarcoding metagenomics microbiome search sequence-alignment

eukaryotes fungi internal-transcribed-spacer its metabarcoding nextflow pacbio pipeline

amplicon bioconductor bioinformatics metabarcoding metagenomics microbiome taxonomy

amplicon bioinformatics contamination metabarcoding metagenomics microbiome

database dna metabarcoding

amplicon-sequencing asv bioinformatics bioinformatics-pipeline conda conda-environment docker end-to-end metabarcoding metabarcoding-pipeline nanopore nanopore-analysis-pipeline nanopore-minion nanopore-reads nanopore-sequencing open-source singularity snakemake snakemake-workflow workflow

16s amplicon-pipeline asv bioinformatics dada2 metabarcoding phyloseq taxonomy

bioinformatics-pipeline edna edna-pipeline metabarcoding

arise hpc metabarcoding r

de-identification decontamination edna fastq filter long-reads metabarcoding metagenomics microbiome nanopore nextflow nf-core pipeline short-reads shotgun taxonomic-classification taxonomic-profiling workflow

bioinformatics clustering fasta metabarcoding microbiome sequence