annotation bioinformatics cancer conda containers gatk4 genomics germline next-generation-sequencing nextflow nf-core pipeline pre-processing reproducible-research somatic target-panels variant-calling whole-exome-sequencing whole-genome-sequencing workflow

cancer-genomics delly delly-users genomic germline rearrangement structural-variation sv-discovery svs tumor

alignment germline mutations sequencing somatic-mutations somatic-variants structural-variation variant-calling

annotation cram genotyping germline germline-variant-calling ngs ngs-pipeline short-reads

germline indel snp validation variant-analysis variant-calling wgs wholegenomesequencing