Updated 9 months ago
SNPRelate
R package: parallel computing toolset for relatedness and principal component analysis of SNP data (Development version only)
Updated 9 months ago
SeqArray
Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)
Updated 9 months ago
HIBAG
R package – HLA Genotype Imputation with Attribute Bagging (development version only)
Updated 9 months ago
gwasrapidd
gwasrapidd: an R package to query, download and wrangle GWAS Catalog data
Updated 9 months ago
https://github.com/babinyurii/virus-genome-assembly-using-ngs-data
workflow and notes on large virus genome assembly and snp call using FastQC, Trimmomatic, bowtie2, and samtools.
Updated 9 months ago
germlineshortv_biovalidation
Workflow for biological validation of germline SNP and indel variant datasets.
Updated 9 months ago
https://github.com/cnag-biomedical-informatics/beacon2-cbi-tools
Beacon v2 - CNAG Biomedical Informatics - Tools (Data ingestion tools)