Projects

Updated 6 months ago

Catalyst • Rank 16.2 • Science 77%

Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.

biology chemical-reactions differential-equations dsl gillespie-algorithm julia ode rate-laws reaction-network scientific-machine-learning sciml sde simulation systems-biology systems-biology-simulation

Updated 6 months ago

SBMLToolkit • Rank 9.7 • Science 67%

SBML differential equation and chemical reaction model (Gillespie simulations) for Julia's SciML ModelingToolkit

chemical-reaction-networks differential-equations gillespie-algorithm julia ode quantitative-systems-pharmacology sbml sciml systems-biology

Updated 6 months ago

MomentClosure • Rank 7.3 • Science 67%

Tools to generate and study moment equations for any chemical reaction network using various moment closure approximations

chemical-reaction-networks gene-network gillespie-algorithm moment-closure moment-equations moments stochastic-processes systems-biology

Updated 6 months ago

delayssatoolkit.jl • Science 57%

DelaySSAToolkit.jl: a tool in Julia for stochastic simulation with delays

chemical-reaction-networks delay-systems gene-network gillespie-algorithm stochastic-process stochastic-simulation-algorithm systems-biology

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science

Catalyst • Rank 16.2 • Science 77%

SBMLToolkit • Rank 9.7 • Science 67%

MomentClosure • Rank 7.3 • Science 67%

delayssatoolkit.jl • Science 57%