Scientific Software
Updated 6 months ago

GlobalSensitivity.jl — Peer-reviewed • Rank 13.2 • Science 100%

GlobalSensitivity.jl: Performant and Parallel Global Sensitivity Analysis with Julia - Published in JOSS (2022)

Scientific Software
Updated 6 months ago

gotranx — Peer-reviewed • Rank 10.4 • Science 100%

gotranx: General ODE translator - Published in JOSS (2024)

Mathematics (37%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

ProbNumDiffEq.jl — Peer-reviewed • Rank 8.8 • Science 100%

ProbNumDiffEq.jl: Probabilistic Numerical Solvers for Ordinary Differential Equations in Julia - Published in JOSS (2024)

Scientific Software
Updated 6 months ago

yaml2sbml — Peer-reviewed • Rank 8.4 • Science 95%

yaml2sbml: Human-readable and -writable specification of ODE models and their conversion to SBML - Published in JOSS (2021)

Scientific Software · Peer-reviewed
Scientific Software
Updated 6 months ago

OwlDE — Peer-reviewed • Rank 6.0 • Science 95%

OwlDE: making ODEs first-class Owl citizens - Published in JOSS (2019)

Scientific Software
Updated 6 months ago

Flint — Peer-reviewed • Rank 3.7 • Science 95%

Flint: a simulator for biological and physiological models in ordinary and stochastic differential equations - Published in JOSS (2020)

Scientific Software · Peer-reviewed
Updated 6 months ago

Catalyst • Rank 16.2 • Science 77%

Chemical reaction network and systems biology interface for scientific machine learning (SciML). High performance, GPU-parallelized, and O(1) solvers in open source software.

Updated 6 months ago

parpe • Rank 6.6 • Science 85%

Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.

Updated 6 months ago

Sundials • Rank 17.8 • Science 67%

Julia interface to Sundials, including a nonlinear solver (KINSOL), ODE's (CVODE and ARKODE), and DAE's (IDA) in a SciML scientific machine learning enabled manner

Updated 6 months ago

ModelingToolkit • Rank 20.2 • Science 64%

An acausal modeling framework for automatically parallelized scientific machine learning (SciML) in Julia. A computer algebra system for integrated symbolics for physics-informed machine learning and automated transformations of differential equations

Updated 6 months ago

DelayDiffEq • Rank 16.2 • Science 67%

Delay differential equation (DDE) solvers in Julia for the SciML scientific machine learning ecosystem. Covers neutral and retarded delay differential equations, and differential-algebraic equations.

Updated 6 months ago

SciMLBenchmarks • Rank 11.5 • Science 67%

Scientific machine learning (SciML) benchmarks, AI for science, and (differential) equation solvers. Covers Julia, Python (PyTorch, Jax), MATLAB, R

Updated 6 months ago

ImplicitDiscreteSolve • Rank 24.0 • Science 54%

High performance ordinary differential equation (ODE) and differential-algebraic equation (DAE) solvers, including neural ordinary differential equations (neural ODEs) and scientific machine learning (SciML)

Updated 6 months ago

SBMLToolkit • Rank 9.7 • Science 67%

SBML differential equation and chemical reaction model (Gillespie simulations) for Julia's SciML ModelingToolkit

Updated 6 months ago

JumpProcesses • Rank 17.6 • Science 59%

Build and simulate jump equations like Gillespie simulations and jump diffusions with constant and state-dependent rates and mix with differential equations and scientific machine learning (SciML)

Scientific Software
Updated 6 months ago

NeuroDiffEq — Peer-reviewed • Rank 15.5 • Science 59%

NeuroDiffEq: A Python package for solving differential equations with neural networks - Published in JOSS (2020)

Updated 6 months ago

SciMLSensitivity • Rank 16.8 • Science 54%

A component of the DiffEq ecosystem for enabling sensitivity analysis for scientific machine learning (SciML). Optimize-then-discretize, discretize-then-optimize, adjoint methods, and more for ODEs, SDEs, DDEs, DAEs, etc.

Updated 6 months ago

DifferentialEquations • Rank 19.5 • Science 51%

Multi-language suite for high-performance solvers of differential equations and scientific machine learning (SciML) components. Ordinary differential equations (ODEs), stochastic differential equations (SDEs), delay differential equations (DDEs), differential-algebraic equations (DAEs), and more in Julia.

Updated 6 months ago

SteadyStateDiffEq • Rank 14.8 • Science 54%

Solvers for steady states in scientific machine learning (SciML)

Updated 6 months ago

DiffEqBayes • Rank 11.2 • Science 54%

Extension functionality which uses Stan.jl, DynamicHMC.jl, and Turing.jl to estimate the parameters to differential equations and perform Bayesian probabilistic scientific machine learning

Updated 6 months ago

DiffEqPhysics • Rank 11.2 • Science 54%

A library for building differential equations arising from physical problems for physics-informed and scientific machine learning (SciML)

Updated 6 months ago

DiffEqDevTools • Rank 11.1 • Science 54%

Benchmarking, testing, and development tools for differential equations and scientific machine learning (SciML)

Updated 6 months ago

SciMLExpectations • Rank 8.5 • Science 54%

Fast uncertainty quantification for scientific machine learning (SciML) and differential equations

Updated 6 months ago

DASSL • Rank 7.3 • Science 54%

Solves stiff differential algebraic equations (DAE) using variable stepsize backwards finite difference formula (BDF) in the SciML scientific machine learning organization

Updated 6 months ago

sbml2julia • Rank 5.4 • Science 51%

A tool to for optimizing parameters of ordinary differential equation (ODE) models. SBML2Julia translates a model from SBML/PEtab format into Julia for Mathematical Programming (JuMP), performs the optimization task and returns the results.

Updated 6 months ago

DiffEqCallbacks • Rank 17.6 • Science 36%

A library of useful callbacks for hybrid scientific machine learning (SciML) with augmented differential equation solvers

Updated 6 months ago

BVProblemLibrary • Rank 11.9 • Science 36%

A library of premade problems for examples and testing differential equation solvers and other SciML scientific machine learning tools

Updated 6 months ago

diffeqdocs.jl • Rank 11.1 • Science 36%

Documentation for the DiffEq differential equations and scientific machine learning (SciML) ecosystem

Updated 6 months ago

mrgsolve • Rank 17.5 • Science 26%

Simulate from ODE-based population PK/PD and QSP models in R

Updated 6 months ago

desolver • Rank 4.6 • Science 36%

A Python library for solving Initial Value Problems using various numerical integration methods.

Updated 6 months ago

pkpdsim • Rank 12.9 • Science 26%

Simulate PK-PD models defined as ODE systems

Updated 6 months ago

scimltutorialsoutput • Rank 5.3 • Science 10%

Tutorials for doing scientific machine learning (SciML) and high-performance differential equation solving with open source software.

Updated 6 months ago

cvode_wrap • Science 44%

A wrapper around the cvode(S) ODE solver from sundials. Mirror of https://gitlab.inria.fr/InBio/Public/cvode-rust-wrap

Updated 5 months ago

https://github.com/avitase/libgravix2 • Science 13%

A fast yet precise simulation of conservative, attractive forces acting on point-like particles embedded onto the surface of a unit sphere.

Updated 6 months ago

exactodereduction.jl • Science 31%

Exact reduction of ODE models via linear transformations

Updated 6 months ago

solve_ivp_pint • Science 44%

ODE solver with unit support using Pint

Updated 6 months ago

BridgeDiffEq • Science 54%

A thin wrapper over Bridge.jl for the SciML scientific machine learning common interface, enabling new methods for neural stochastic differential equations (neural SDEs)

Updated 5 months ago

https://github.com/a-herzog/numericalode • Science 26%

Numerical differential equation solver visualized the numerical solution of ode

Updated 6 months ago

moccasin • Science 41%

MOCCASIN translates basic ODE-based MATLAB models of biological processes into SBML format.

Scientific Software
Updated 6 months ago

MCSimMod — Peer-reviewed • Science 93%

MCSimMod: An R Package for Working with Ordinary Differential Equation Models Encoded in the MCSim Model Specification Language - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Updated 6 months ago

org.hipparchus:hipparchus • Science 44%

An efficient, general-purpose mathematics components library in the Java programming language