Projects

Updated 6 months ago

https://github.com/bigbio/py-pgatk • Rank 9.7 • Science 26%

Python tools for proteogenomics analysis toolkit

ensembl mass-spectrometry proteogenomics proteogenomics-analysis-toolkit proteomics python vcf

Updated 6 months ago

https://github.com/bzhanglab/pepquery • Rank 1.9 • Science 13%

PepQuery: a targeted peptide search engine

mass-spectrometry peptide-identification proteogenomics proteomics

Updated 6 months ago

https://github.com/bzhanglab/pepquerymhc • Science 39%

PepQueryMHC: Rapid and Comprehensive Tumor Antigen Prioritization from Immunopeptidomics Data

immunopeptidomics proteogenomics

Updated 6 months ago

quantms • Science 67%

Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.

lfq mass-spectrometry proteogenomics proteomics tmt

Updated 6 months ago

proteogendb • Science 54%

ProteoGenDB: A Fast Proteogenomic Pipeline for Identifying Sequence Variants in Proteomics Data

bioinformatics mass-spectrometry proteogenomics proteomics

Updated 6 months ago

https://github.com/bigbio/pgatk-io • Science 13%

High performance io library for proteogenomics

fileformats mass-spectrometry parquet proteogenomics proteomics spark

Updated 6 months ago

https://github.com/bigbio/pgt-pangenome • Science 36%

Protegenomics analysis based on Pangenome references

mass-spectrometry non-canonical pangenome protein proteogenomics proteomics public-proteomics quantms variants

Updated 6 months ago

https://github.com/bigbio/quantms-utils • Science 39%

A python library with scripts and helpers classes for quantms workflow

bigdata cloud mass-spectrometry nextflow proteogenomics proteomics

Updated 6 months ago

pgdb • Science 41%

ProteomeGenomics Database Creation - Nextflow Pipeline

cosmic ensembl mass-spectrometry nextflow nf-core proteogenomics proteomics

Updated 6 months ago

https://github.com/bzhanglab/neoflow • Science 13%

NeoFlow: a proteogenomics pipeline for neoantigen discovery

neoantigen-discovery neoantigen-prediction nextflow-pipeline novel-peptide-identifications proteogenomics

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Open Source Science

https://github.com/bigbio/py-pgatk • Rank 9.7 • Science 26%

https://github.com/bzhanglab/pepquery • Rank 1.9 • Science 13%

https://github.com/bzhanglab/pepquerymhc • Science 39%

quantms • Science 67%

proteogendb • Science 54%

https://github.com/bigbio/pgatk-io • Science 13%

https://github.com/bigbio/pgt-pangenome • Science 36%

https://github.com/bigbio/quantms-utils • Science 39%

pgdb • Science 41%

https://github.com/bzhanglab/neoflow • Science 13%