Scientific Software
Updated 10 months ago

genomepy — Peer-reviewed • Rank 17.3 • Science 59%

genomepy: download genomes the easy way - Published in JOSS (2017)

Engineering (40%)
Scientific Software · Peer-reviewed
Updated 10 months ago

ensembldb • Rank 21.2 • Science 23%

This is the ensembldb development repository.

Updated 10 months ago

biomaRt • Science 26%

R package providing query functionality to BioMart instances like Ensembl

Updated 10 months ago

https://github.com/bridgedb/create-bridgedb-genedb • Science 18%

Example of script to query BioMart, parse and create a BridgeDb database

Updated 10 months ago

pgdb • Science 41%

ProteomeGenomics Database Creation - Nextflow Pipeline

Updated 10 months ago

fair_genome_indexer • Science 44%

Download and index Ensembl sequences and annotations, remove non-canonical chromosimes, remove low TSL, index with multiple tools