Projects

Updated 10 months ago

A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) and Proximity Network (PNA) assays.

molecular-pixelation pixelgen-technologies protein proteomics proximity-network single-cell single-cell-omics spatial

Updated 10 months ago

Simulating single-cell data using gene regulatory networks 📠

benchmarking single-cell single-cell-analysis single-cell-omics

Updated 10 months ago

One single-cell pipeline to rule them all, one pipeline to find them, one pipeline to unify them all, and with the data bind them.

10xgenomics single-cell-atac-seq single-cell-cite-seq single-cell-omics single-cell-rna-seq single-cell-vdj

Updated 10 months ago

Pipeline to generate Molecular Pixelation data with Pixelator (Pixelgen Technologies AB)

molecular-pixelation nextflow nf-core pipeline pixelator pixelgen-technologies proteins single-cell single-cell-omics workflow

Updated 10 months ago

BANKSY: spatial clustering

clustering-algorithm single-cell-omics spatial-omics

ecosyste.ms