GitHub
AutoEIS
AutoEIS: Automated equivalent circuit modeling from electrochemical impedance spectroscopy data using statistical machine learning - Published in JOSS (2025)
PathSim - A System Simulation Framework
PathSim - A System Simulation Framework - Published in JOSS (2025)
BESMARTS
BESMARTS: A toolkit for data-driven force field design using binary-encoded SMARTS - Published in JOSS (2025)
EXP
EXP: a Python/C++ package for basis function expansion methods in galactic dynamics - Published in JOSS (2025)
Minterpy
Minterpy: multivariate polynomial interpolation in Python - Published in JOSS (2025)
Topography-based surface water modeling in Julia, with support for infiltration and temporal developments
Topography-based surface water modeling in Julia, with support for infiltration and temporal developments - Published in JOSS (2025)
DIFFICE-jax
DIFFICE-jax: Differentiable neural-network solver for data assimilation of ice shelves in JAX - Published in JOSS (2025)
pengWann
pengWann: Descriptors of chemical bonding from Wannier functions - Published in JOSS (2025)
Pydre
Pydre: A Python package for driving simulation data reduction - Published in JOSS (2025)
OPTIMUS
OPTIMUS: A Multidimensional Global Optimization Package - Published in JOSS (2025)
ReadmeReady
ReadmeReady: Free and Customizable Code Documentation with LLMs - A Fine-Tuning Approach - Published in JOSS (2025)
rjaf
rjaf: Regularized Joint Assignment Forest with Treatment Arm Clustering - Published in JOSS (2025)
number-uint32-base-muldw
Compute the double word product of two unsigned 32-bit integers.
LongMemory.jl
LongMemory.jl: Generating, Estimating, and Forecasting Long Memory Models in Julia - Published in JOSS (2025)
QuantumACES.jl
QuantumACES.jl: design noise characterisation experiments for quantum computers - Published in JOSS (2025)
stats-strided-snanrange
Calculate the range of a single-precision floating-point strided array, ignoring NaN values.
r-lib-actions
GitHub Actions for the R community. Secure drop-in replacement for r-lib/actions.
math-base-special-minabsf
Return the minimum absolute single-precision floating-point number.
DemeterWatch
DemeterWatch: A Java tool to detect Law of Demeter violations in Java collections - Published in JOSS (2025)
fasta-rbca-resolver
Fasta Automated Rule-Based Country Assignment (RBCA) for influenza
fastapi-postgres
Template for building FastAPI Asynchronous applications with PostgreSQL(SQLModel)
physicell
PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch. Thanks!
quarto-modal
A Quarto extension providing a simple way to create Bootstrap modals in your HTML documents.
COHESIVM
COHESIVM: Combinatorial h+/e- Sample Investigation using Voltaic Measurements - Published in JOSS (2025)
zensvi
This package is a one-stop solution for downloading, cleaning, analyzing street view imagery
ScatteringOptics.jl
ScatteringOptics.jl: An Interstellar Scattering Framework in the Julia Programming Language - Published in JOSS (2025)
collectress
Collectress (/kəˈlɛktɹɪs/) is a Python tool designed for downloading web data feeds periodically and consistently.
pipelines
Custom JWST reduction pipelines for NIRSpec and MIRI Solar System observations
bioinformatics-templates
Reusable R/Bash scripts for RNA-Seq (DESeq2), VCF filtering, and multi-omics visualization (heatmaps, volcano plots)
2024-11-27-hpcc-online
Workshop website for HPC Carpentry, Term ,1 acc year 2024/25
PeakPerformance - A tool for Bayesian inference-based fitting of LC-MS/MS peaks
PeakPerformance - A tool for Bayesian inference-based fitting of LC-MS/MS peaks - Published in JOSS (2024)
taxotagger
DNA taxonomy identification, powered by deep learning and semantic search
kraken-infinity-grid
Infinity Grid Trading Algorithm for the Kraken Cryptocurrency Exchange.
sir-model
Code & Simulink/linear-systems models for “A microscopic-view Infection model based on linear systems” (Information Sciences, 2020)
analysis-gradient-descent-circuits
Code & Simulink models for “Analysis of gradient descent algorithms: Discrete to continuous domains and circuit equivalents” (SCL, 2025)
https://github.com/erictleung/coursework
:notebook: Coursework for miscellaneous programming, web development, etc courses
https://github.com/erictleung/freecodecamp-news-analysis
:office: Code and notes on running various database management systems
od-weapon-detection-sohas-classification
OD-WeaponDetection: Sohas Classification
floodnet-track-2
FloodNet 2021: A High Resolution Aerial Imagery Dataset for Post Flood Scene Understanding (Track 2)
Biosensor Framework
Biosensor Framework: A C# Library for Affective Computing - Published in JOSS (2021)
small-size-construction-tools
Image Dataset for Object Detection of Small Size Construction Tools
apple-dataset-benchmark-from-orchard-environment
Apple Dataset Benchmark from Orchard Environment in Modern Fruiting Wall
power-plants-damage-detection
Replication Data for Remote Damage Detection of Power Plants using Deep Learning based drone image analysis
geospatialsuite: Comprehensive Geospatiotemporal Analysis and Multimodal Integration Toolkit for R
geospatialsuite: Comprehensive Geospatiotemporal Analysis and Multimodal Integration Toolkit for R - Published in JOSS (2026)
llm-obsidian-content
"Generative wiki" rabbit hole conversations projected into a knowledge garden
Enhancing short-read sequencing simulation: Updates to NEAT
Enhancing short-read sequencing simulation: Updates to NEAT - Published in JOSS (2026)
pbe-si-ads-2024-2-tiaw-t1-sistema-de-rh
icei-puc-minas-pbe-ads-si-2024-2-pbe-si-ads-2024-2-tiaw-ti1-template created by GitHub Classroom
grafit
Toolbox for Frequency Response Function Identification in Gravitational Wave detectors
rotate-osisaf-sea-ice-drift-vectors
This repo demonstrates common transformations of sea-ice drift vector components. It was originally prepared as a companion to the manuscript documenting the first version of the OSI SAF sea-ice drift Climate Data Record (OSI-455) (https://doi.org/10.5194/essd-2023-40).
cvddqchecker
CvdDqChecker: A Software Solution for Explainable and Traceable Assessments of Cardiovascular Disease Data Quality
2023-02-07-ttt-online-cet
Online Instructor Training on 7 - 8 February from 9 am to 5 pm CET
IndividualDisplacements.jl
IndividualDisplacements.jl: a Julia package to simulate and study particle displacements within the climate system - Published in JOSS (2021)