GitHub

https://github.com

Scientific Software
Updated 10 months ago

AutoEIS — Peer-reviewed • Science 98%

AutoEIS: Automated equivalent circuit modeling from electrochemical impedance spectroscopy data using statistical machine learning - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

BESMARTS — Peer-reviewed • Science 93%

BESMARTS: A toolkit for data-driven force field design using binary-encoded SMARTS - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

EXP — Peer-reviewed • Science 98%

EXP: a Python/C++ package for basis function expansion methods in galactic dynamics - Published in JOSS (2025)

Scientific Software
Updated 10 months ago

Minterpy — Peer-reviewed • Science 93%

Minterpy: multivariate polynomial interpolation in Python - Published in JOSS (2025)

Engineering (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

Topography-based surface water modeling in Julia, with support for infiltration and temporal developments — Peer-reviewed • Science 67%

Topography-based surface water modeling in Julia, with support for infiltration and temporal developments - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

DIFFICE-jax — Peer-reviewed • Science 93%

DIFFICE-jax: Differentiable neural-network solver for data assimilation of ice shelves in JAX - Published in JOSS (2025)

Earth and Environmental Sciences (40%) Artificial Intelligence and Machine Learning (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

pengWann — Peer-reviewed • Science 98%

pengWann: Descriptors of chemical bonding from Wannier functions - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

Pydre — Peer-reviewed • Science 100%

Pydre: A Python package for driving simulation data reduction - Published in JOSS (2025)

Mathematics
Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

OPTIMUS — Peer-reviewed • Science 93%

OPTIMUS: A Multidimensional Global Optimization Package - Published in JOSS (2025)

Computer Science (35%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

ReadmeReady — Peer-reviewed • Science 93%

ReadmeReady: Free and Customizable Code Documentation with LLMs - A Fine-Tuning Approach - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

rjaf — Peer-reviewed • Science 95%

rjaf: Regularized Joint Assignment Forest with Treatment Arm Clustering - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

LongMemory.jl — Peer-reviewed • Science 100%

LongMemory.jl: Generating, Estimating, and Forecasting Long Memory Models in Julia - Published in JOSS (2025)

Scientific Software
Updated 10 months ago

QuantumACES.jl — Peer-reviewed • Science 98%

QuantumACES.jl: design noise characterisation experiments for quantum computers - Published in JOSS (2025)

Engineering (32%)
Scientific Software · Peer-reviewed
Updated 10 months ago

stats-strided-snanrange • Science 44%

Calculate the range of a single-precision floating-point strided array, ignoring NaN values.

Updated 10 months ago

r-lib-actions • Science 44%

GitHub Actions for the R community. Secure drop-in replacement for r-lib/actions.

Updated 10 months ago

math-base-special-minabsf • Science 44%

Return the minimum absolute single-precision floating-point number.

Scientific Software
Updated 10 months ago

DemeterWatch — Peer-reviewed • Science 95%

DemeterWatch: A Java tool to detect Law of Demeter violations in Java collections - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Updated 10 months ago

automatic1111 • Science 54%

Updated 10 months ago

fasta-rbca-resolver • Science 57%

Fasta Automated Rule-Based Country Assignment (RBCA) for influenza

Updated 10 months ago

raft-meets-dicl • Science 44%

Master Thesis

Updated 10 months ago

hydesign • Science 57%

Mirror of https://gitlab.windenergy.dtu.dk/TOPFARM/hydesign

Updated 10 months ago

fastapi-postgres • Science 44%

Template for building FastAPI Asynchronous applications with PostgreSQL(SQLModel)

Updated 10 months ago

physicell • Science 67%

PhysiCell: Scientist end users should use latest release! Developers please fork the development branch and submit PRs to the dev branch. Thanks!

Updated 10 months ago

quarto-modal • Science 44%

A Quarto extension providing a simple way to create Bootstrap modals in your HTML documents.

Updated 10 months ago

epiagora • Science 57%

Updated 10 months ago

chirpy • Science 57%

A python package for chirality, dynamics, and molecular vibrations.

Updated 10 months ago

qlb-iot • Science 44%

Scientific Software
Updated 10 months ago

COHESIVM — Peer-reviewed • Science 98%

COHESIVM: Combinatorial h+/e- Sample Investigation using Voltaic Measurements - Published in JOSS (2025)

Updated 10 months ago

zensvi • Science 49%

This package is a one-stop solution for downloading, cleaning, analyzing street view imagery

Updated 10 months ago

dreamlab_demo_mjd • Science 44%

A little experiment with friends

Scientific Software
Updated 10 months ago

ScatteringOptics.jl — Peer-reviewed • Science 95%

ScatteringOptics.jl: An Interstellar Scattering Framework in the Julia Programming Language - Published in JOSS (2025)

Engineering (40%)
Scientific Software · Peer-reviewed
Updated 10 months ago

collectress • Science 44%

Collectress (/kəˈlɛktɹɪs/) is a Python tool designed for downloading web data feeds periodically and consistently.

Updated 10 months ago

pipelines • Science 54%

Custom JWST reduction pipelines for NIRSpec and MIRI Solar System observations

Updated 10 months ago

infoorgfinal • Science 44%

My final for Info Org

Updated 10 months ago

bioinformatics-templates • Science 57%

Reusable R/Bash scripts for RNA-Seq (DESeq2), VCF filtering, and multi-omics visualization (heatmaps, volcano plots)

Updated 10 months ago

corpress • Science 49%

Create a text corpus from a WordPress site using the WordPress API.

Updated 10 months ago

2024-11-27-hpcc-online • Science 52%

Workshop website for HPC Carpentry, Term ,1 acc year 2024/25

Updated 10 months ago

seismogen • Science 52%

A Python package for earthquake generation

Scientific Software
Updated 10 months ago

PeakPerformance - A tool for Bayesian inference-based fitting of LC-MS/MS peaks — Peer-reviewed • Science 96%

PeakPerformance - A tool for Bayesian inference-based fitting of LC-MS/MS peaks - Published in JOSS (2024)

Engineering (40%)
Scientific Software · Peer-reviewed
Updated 10 months ago

deblurring • Science 44%

Updated 10 months ago

dc • Science 54%

Updated 10 months ago

nomenclature • Science 54%

Updated 10 months ago

taxotagger • Science 54%

DNA taxonomy identification, powered by deep learning and semantic search

Updated 10 months ago

sir-model • Science 44%

Code & Simulink/linear-systems models for “A microscopic-view Infection model based on linear systems” (Information Sciences, 2020)

Updated 10 months ago

analysis-gradient-descent-circuits • Science 44%

Code & Simulink models for “Analysis of gradient descent algorithms: Discrete to continuous domains and circuit equivalents” (SCL, 2025)

Updated 10 months ago

array-base-zip2views • Science 44%

Zip one or more arrays to an array of composite views.

Updated 8 months ago

https://github.com/erictleung/coursework • Science 10%

:notebook: Coursework for miscellaneous programming, web development, etc courses

Updated 10 months ago

dummydatarepo • Science 67%

Updated 10 months ago

makerere-university-beans • Science 44%

Makerere University Beans Image Dataset

Updated 10 months ago

nu-images • Science 44%

nuScenes: A multimodal dataset for autonomous driving

Updated 10 months ago

zhang-lab-data-oct • Science 44%

ZhangLabData: Optical Coherence Tomography

Updated 8 months ago

https://github.com/erictleung/freecodecamp-news-analysis • Science 10%

:office: Code and notes on running various database management systems

Updated 10 months ago

afid • Science 44%

AFID: A Public Fabric Image Database for Defect Detection

Updated 10 months ago

od-weapon-detection-sohas-classification • Science 44%

OD-WeaponDetection: Sohas Classification

Updated 10 months ago

isic-2017-part-3 • Science 44%

ISIC 2017: Part 3 - Disease Classification Task Dataset

Updated 10 months ago

floodnet-track-2 • Science 44%

FloodNet 2021: A High Resolution Aerial Imagery Dataset for Post Flood Scene Understanding (Track 2)

Updated 10 months ago

gesture-v1 • Science 44%

Gesture v1.0 Dataset

Scientific Software
Updated 10 months ago

Biosensor Framework — Peer-reviewed • Science 100%

Biosensor Framework: A C# Library for Affective Computing - Published in JOSS (2021)

Scientific Software · Peer-reviewed
Updated 10 months ago

urban-street-flower • Science 44%

Tree Dataset of Urban Street: Flower

Updated 10 months ago

small-size-construction-tools • Science 44%

Image Dataset for Object Detection of Small Size Construction Tools

Updated 10 months ago

laboro-tomato • Science 44%

Laboro Tomato: Instance segmentation dataset

Updated 10 months ago

apple-dataset-benchmark-from-orchard-environment • Science 44%

Apple Dataset Benchmark from Orchard Environment in Modern Fruiting Wall

Updated 10 months ago

cocostuff164k • Science 44%

Updated 10 months ago

aeroscapes • Science 44%

The AeroScapes Semantic Segmentation Dataset

Updated 8 months ago

https://github.com/lymdlut/deeplearning • Science 10%

深度学习入门教程, 优秀文章, Deep Learning Tutorial

Updated 10 months ago

polypgen • Science 44%

PolypGen

Updated 10 months ago

power-plants-damage-detection • Science 44%

Replication Data for Remote Damage Detection of Power Plants using Deep Learning based drone image analysis

Updated 10 months ago

bsdata • Science 44%

Updated about 2 months ago

geospatialsuite: Comprehensive Geospatiotemporal Analysis and Multimodal Integration Toolkit for R • Science 92%

geospatialsuite: Comprehensive Geospatiotemporal Analysis and Multimodal Integration Toolkit for R - Published in JOSS (2026)

Updated 10 months ago

rocole • Science 44%

RoCoLe: A robusta coffee leaf images dataset

Updated 10 months ago

llm-obsidian-content • Science 44%

"Generative wiki" rabbit hole conversations projected into a knowledge garden

Updated 10 months ago

mpl • Science 44%

Mathematics Programming Language

Updated 10 months ago

car-license-plate • Science 44%

Car License Plate Detection

Updated about 2 months ago

Enhancing short-read sequencing simulation: Updates to NEAT • Science 87%

Enhancing short-read sequencing simulation: Updates to NEAT - Published in JOSS (2026)

Updated 10 months ago

floodnet • Science 44%

FloodNet Challenge

Updated 10 months ago

road-damage • Science 44%

Road Damage Dataset

Updated 10 months ago

pbe-si-ads-2024-2-tiaw-t1-sistema-de-rh • Science 44%

icei-puc-minas-pbe-ads-si-2024-2-pbe-si-ads-2024-2-tiaw-ti1-template created by GitHub Classroom

Updated 10 months ago

sixarm_ruby_attask • Science 44%

SixArm.com » Ruby » AtTask project management bindings

Updated 10 months ago

peerlab • Science 44%

PeerLab Website

Updated 10 months ago

grafit • Science 54%

Toolbox for Frequency Response Function Identification in Gravitational Wave detectors

Updated 10 months ago

rotate-osisaf-sea-ice-drift-vectors • Science 54%

This repo demonstrates common transformations of sea-ice drift vector components. It was originally prepared as a companion to the manuscript documenting the first version of the OSI SAF sea-ice drift Climate Data Record (OSI-455) (https://doi.org/10.5194/essd-2023-40).

Updated 10 months ago

cvddqchecker • Science 44%

CvdDqChecker: A Software Solution for Explainable and Traceable Assessments of Cardiovascular Disease Data Quality

Updated 10 months ago

2023-02-07-ttt-online-cet • Science 44%

Online Instructor Training on 7 - 8 February from 9 am to 5 pm CET

Scientific Software
Updated 10 months ago

IndividualDisplacements.jl — Peer-reviewed • Science 59%

IndividualDisplacements.jl: a Julia package to simulate and study particle displacements within the climate system - Published in JOSS (2021)

Scientific Software · Peer-reviewed
Updated 8 months ago

https://github.com/erictleung/.github • Science 13%

Eric Leung's GitHub settings