GitHub
asreview-dory
Official extension for ASReview LAB enabling state-of-the-art NLP models with dense embeddings and deep learning architectures. Ideal for systematic reviews where lightweight models fall short.
https://github.com/demianhj/matterport
Matterport3D is a pretty awesome dataset for RGB-D machine learning tasks :)
https://github.com/broadinstitute/regional_missense_constraint
Code to calculate regional missense constraint
org-website
This is the lab-website-template based website for the Lücken lab at the Computational Health Center at Helmholtz Munich.
inverseproblemsolvers
A collection of python codes based on numpy and numba that compute the solution to A x =b
cold-spray-macroscopic-simulator
GitHub repository of the work completed during my 6-month internship on modeling and simulating the Cold Spray process.
sciview
sciview is a tool for visualization and interaction with ND image and mesh data
Feature-augmented_Traffic_Attack_Detection_Based_on_UNSW-NB15_Dataset
Feature-augmented Traffic Attack Detection Based on UNSW-NB15 Dataset.
NonuniformFFTs
Yet another package for computing multidimensional non-uniform fast Fourier transforms (NUFFTs) in Julia
repulsor
A package for handling tangent-point energy and other nonlocal energies.
tomte
A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient
anova-with-flexible-emmeans
This Shiny app performs ANOVA (Type I/II/III) and EMMEANS analyses on uploaded Excel data.
bioregion
:package: An R package compiling all steps of a bioregionalization workflow
offenses_data
Demographics and offenses of California's prison population acquired by Redo.io through public records laws
torchsom
TorchSOM is a PyTorch-based library for training Self-Organizing Maps (SOMs), a type of unsupervised learning algorithm used for clustering and dimensionality reduction. Designed for scalability and ease of use, this implementation is optimized for large-scale data.
https://github.com/demianhj/generative-models
Generative Models by Stability AI
hogpp
Fast computation of rectangular histogram of oriented gradients (R-HOG) features using integral histogram
@stdlib/random-streams-randi
Create a readable stream for generating pseudorandom numbers having integer values.
wisio
Analyze, visualize, and understand I/O performance issues in HPC workflows
modalities
Modalities, a PyTorch-native framework for distributed and reproducible foundation model training.
verlab-segmentation
This method introduces a novel methodology for the partitioning of the social space associated with arbitrary groups of individuals into approachable regions.
facts
Repository for the article in the online magazine Data Science Collective.
https://github.com/demichie/peaklocator_1.0
web application to analyze and compare spatial grid files
eisca
A single-cell RNA-seq pipeline aimed at covering all analysis stages from quantification and clustering to tertiary analyses.
avdeepfake1m
[ACM MM Award] AV-Deepfake1M: A Large-Scale LLM-Driven Audio-Visual Deepfake Dataset
https://github.com/demichie/nlerosion
2D numerical model for the temporal evolution of simple landforms such as cinder cones by nonlinear diffusive processes
frugally-deep
A lightweight header-only library for using Keras (TensorFlow) models in C++.
elfen
A python package to efficiently extract linguistic features for text/NLP datasets
sefo
An Octave package for generating probabilistic forecasts of weather quantities
lang-gle
Finite state and Constraint Grammar based analysers and proofing tools, and language resources for the Irish language
maxfitstoolkit
This collection of Windows command-line utilities is designed for manipulating FITS files, primarily to streamline photometry data reduction with IRIS, a free astronomical image processing software. Currently, the package assists in building calibration master frames and preparing calibrated science images for photometry in AstroImageJ.
stats-strided-wasm-dmeanors
Calculate the arithmetic mean of a double-precision floating-point strided array using ordinary recursive summation.
transform-emr
This model is a decoder transformer based model aiming to model events predictions from EMR records as a sequential text generation problem. This project is a part of my thesis research.
dynamic-consent-management
Dynamic Consent Management of Speakers in Voice Assistant Systems
ucd-agg-website
Laboratory website for the University College Dublin Animal Genomics Group (UCD-AGG)
constructive-konig
Coq artifact for "Constructive substitutes for König's lemma"
hicberg
Statistical profiling based program for contact (Hi-C) and pair ended genomic data reconstruction
fairroot
C++ simulation, reconstruction and analysis framework for particle physics experiments
https://github.com/jageo/mace-mp-03b-phonon-benchmark
Phonon calculations and evaluation for the MACE MP-0b3 model
nagios-plugin-perl-templates
A set of templates for Nagios check scripts written in Perl.
lightworks
Lightworks is an open-source Python SDK for photonic quantum computing.
StochasticSeriesExpansion
General purpose stochastic series expansion quantum Monte Carlo code.
emolysis
[ACII Demo] Emolysis: A Multimodal Open-Source Group Emotion Analysis and Visualization Toolkit
corticalfolding_ad_aging
Description of the procedures and analysis present in de Moraes et al., in submission. This manuscript was included as Manuscript 1, Independent morphological variables correlate to aging, Mild Cognitive Impairment, and Alzheimer's Disease, at the Doctorate Thesis presented to the Programa de Pós-Graduação em Ciência Médicas at the Instituto D’Or de Pesquisa e Ensino as a partial requirement to obtain the Doctorate Degree. The part of the data used here cannot be shared due to restrictions of the Ethic Comittee. Data can be shared upon reasonable request to the corresponding author. To fullfil these limitation, we will generate random data to simulate the results. The data used at the Supplementary Information are processed data from AHEAD and AOMIC (PIOP1 and PIOP2) (to be uploaded). Get in touch with us (fernandahmoraes@gmail.com) in case any help is needed, our aim is to improve the code as needed! Please cite this work if used: DOI insert DOI code