GitHub
https://github.com/giorginolab/biozernike
Protein structure descriptors and alignment based on 3D Zernike moments.
https://github.com/giorginolab/polychrom
Polymer simulations of chromosomes and generating "in silico" Hi-C maps
lang-ess
Finite state and Constraint Grammar based analysers and proofing tools, and language resources for the Central Siberian Yupik language
lang-mya
Finite state and Constraint Grammar based language resources for the Burmese language. Part of the DIGHT 390R course at BYU.
quantum-cryptography
Experimental data and code from the semester 5 laboratory
lang-liv
Finite state and Constraint Grammar based analysers and proofing tools, and language resources for the Liv language
https://github.com/giorginolab/evobind
In silico directed evolution of peptide binders with AlphaFold
https://github.com/giorginolab/vmd_rmsdttnc
RMSD trajectory tool enhanced with native contacts
lang-luo
Finite state and Constraint Grammar based analysers and proofing tools, and language resources for the Luo (Kenya and Tanzania) language
ni-chaos
Data and Matlab code to reproduce "Noise-induced chaos: A conditioned random dynamics perspective"
saits
The official PyTorch implementation of the paper "SAITS: Self-Attention-based Imputation for Time Series". A fast and state-of-the-art (SOTA) deep-learning neural network model for efficient time-series imputation (impute multivariate incomplete time series containing NaN missing data/values with machine learning). https://arxiv.org/abs/2202.08516
model-selection-sim-study
Simulation study of various variable selection techniques. Intended to examine the bias in parameter estimation in the context of causal health. In particular, we grapple with confounding, unseen confounding and bias amplification.
gs-svocc
Fit single visit occupancy models to data from camera trap and walking transects in the Gran Sabana, Venezuela
df-dn-paper
Conceptual & empirical comparisons between decision forests & deep networks
https://github.com/diging/spring-examples
A project to demonstrate simple workflows, etc.
tiktok-content-scraper
TikTok Content Scraper -- No API-Key needed, minimal dependencies, citable | Download videos (MP4), slides (JPEG) and metadata of author, music, file, hashtags, content, interactions etc.
empire-analysis
A sustainable literature review for analyzing the state and evolution of empirical research in requirements engineering using KG-EmpiRE.
https://github.com/diging/webapp-tomcat8-spring-security-archetype
A Maven archetype to create a Spring Security/MVC project for Tomcat 8
cmac
A core C++ implementation of the Cerebellar Model Articulation Controller (CMAC) with APIs in various languages. This artificial neural network is designed to be used in control system applications.
https://github.com/diging/vm-dockerfiles
A repository for dockerfiles used to setup our VMs
repulsor
A package for handling tangent-point energy and other nonlocal energies.
tomte
A nextflow pipeline for analysing expression and splicing in RNA seq data from rare disease patient
anova-with-flexible-emmeans
This Shiny app performs ANOVA (Type I/II/III) and EMMEANS analyses on uploaded Excel data.
bioregion
:package: An R package compiling all steps of a bioregionalization workflow
NonuniformFFTs
Yet another package for computing multidimensional non-uniform fast Fourier transforms (NUFFTs) in Julia
offenses_data
Demographics and offenses of California's prison population acquired by Redo.io through public records laws
torchsom
TorchSOM is a PyTorch-based library for training Self-Organizing Maps (SOMs), a type of unsupervised learning algorithm used for clustering and dimensionality reduction. Designed for scalability and ease of use, this implementation is optimized for large-scale data.
Feature-augmented_Traffic_Attack_Detection_Based_on_UNSW-NB15_Dataset
Feature-augmented Traffic Attack Detection Based on UNSW-NB15 Dataset.
sciview
sciview is a tool for visualization and interaction with ND image and mesh data
https://github.com/demianhj/generative-models
Generative Models by Stability AI
cold-spray-macroscopic-simulator
GitHub repository of the work completed during my 6-month internship on modeling and simulating the Cold Spray process.
hogpp
Fast computation of rectangular histogram of oriented gradients (R-HOG) features using integral histogram
@stdlib/random-streams-randi
Create a readable stream for generating pseudorandom numbers having integer values.
wisio
Analyze, visualize, and understand I/O performance issues in HPC workflows
inverseproblemsolvers
A collection of python codes based on numpy and numba that compute the solution to A x =b
modalities
Modalities, a PyTorch-native framework for distributed and reproducible foundation model training.
org-website
This is the lab-website-template based website for the Lücken lab at the Computational Health Center at Helmholtz Munich.
https://github.com/broadinstitute/regional_missense_constraint
Code to calculate regional missense constraint
https://github.com/demianhj/matterport
Matterport3D is a pretty awesome dataset for RGB-D machine learning tasks :)
asreview-dory
Official extension for ASReview LAB enabling state-of-the-art NLP models with dense embeddings and deep learning architectures. Ideal for systematic reviews where lightweight models fall short.
verlab-segmentation
This method introduces a novel methodology for the partitioning of the social space associated with arbitrary groups of individuals into approachable regions.
