GitHub
btviewer
This repository contains the code for a user interface for viewing bee tracking photos and human labelling of these tracking images.
autooc
AutoOC: Automated Machine Learning (AutoML) library focused on One-Class Learning algorithms (AutoEncoders, Isolation Forest and One-Class SVM)
cyrcular-calling
A Snakemake workflow for ecDNA detection in Nanopore or Illumina sequencing reads derived from DNA samples enriched for circular DNA.
ineod
iNEOD ☄️- A modern and open implementation of Gauss's method for the Initial Orbit Determination of Near-Earth Objects (Minor Planets)
crawler-course-example
A fully automated web scraping solution that includes scheduling automatic launches through GitHub Actions, using Puppeteer with Node.js to collect data, and storing the data on GitHub Pages for public access.
crumbs
An enterprise-oriented design system, built on top of an open core which is pluggable in any framework.
KHQ
Package for calculating the scores for each dimension of the King's Health Questionnaire, as well as converting KHQ items to KHQ5D scores and calculating the utility index of the KHQ5D.
antifrag-intelligence
A Deep Exploration of Intelligence, Computation, and Consciousness
btpe-iterations
Experiments for paper: An Analysis of an Open Source Binomial Random Variate Generation Algorithm
org.cicirello
Experiments with simulated annealing and an optimized version of the modified lam adaptive annealing schedule
PostNewtonian
Orbital dynamics and waveforms for binary black-hole systems, in the post-Newtonian approximation
dot_analyzer
an ImageJ/Fiji python script for dot spacing and order analysis of SEM micrographs
vrgda-rollup
Minting the proposer for the OP Stack with Variable Rate Gradual Dutch Auctions (VRGDAs)
quantum-walks
A python package for discret time quantum walk with custom shift and coin operators
https://github.com/dynamicsandneuralsystems/pyspi
Comparative analysis of pairwise interactions in multivariate time series.
choleramalawi
Data package tracking the course of the cholera epidemic in Malawi (2023-24)
active-time-theory-unified
Redefining Gravity: The Role of Active Time Theory in Unifying Quantum and Classical Physics
fireveg-db-imports
Fire Ecology database - Code for database imports and data curation
2024-ursi-nrsm-1265
Repository for code featured in "Machine Learning Assisted Optimization Methods for Automated Antenna Design"
proplib-p2108
NTIA/ITS implementation of Recommendation ITU-R P.2108. This Recommendation contains three methods for the prediction of clutter loss: the Height Gain Terminal Correction Model, the Terrestrial Statistical Model, and the Aeronautical Statistical Model.
muni-incorporation
This repository contains the raw data, code, and sources used to create an individual level and state municipal incorporation date dataset.
genhunt
GenHunt: an open-source MATLAB-based application for Huntington's disease screening
zema_emc_annotated
This codebase provides convenient access to the annotated data set of one electromechanical cylinder at ZeMA testbed.
cceap
The Covert Channel Educational Analysis Protocol (CCEAP) is a network protocol designed for teaching covert channels to professionals and students in higher education. It is also an easy-to-use covert channel traffic generator. The basis for CCEAP are so-called `hiding patterns'.
2021-paper-jupyter-reproducible-workflows
Using Jupyter for reproducible scientific workflows
ssp-mmc-plus
Optimizing Spaced Repetition Schedule by Capturing the Dynamics of Memory
phenomics-assistant
LLM retrieval augmented generation agent for the Monarch Knowledge graph.
black-womens-labor
Jekyll site for the Black Women's Labor Project @ Boston College
king-phillips-war
Jekyll site for the King Phillip's War Project @ Boston College
An Introduction to prismAId
An Introduction to prismAId: Open-Source and Open Science AI for Advancing Information Extraction in Systematic Reviews - Published in JOSS (2025)
nplinker-webapp
The NPLinker web app, built with Plotly Dash, for visualizing NPLinker predictions
detection-limit-fitting
Software for fitting robust detection limits to serial dilution data
scrnaseq_howto_ga_workflows
Howto guide for scrnaseq workflows in scrnaseq_ga_workflows
darpanx
DarpanX is a Python 3 package that provides functionality to compute reflectivity and other specular optical functions of a multilayer or single layer mirror for different energy and angles as well as to fit the XRR measurements of the mirrors.
dreamlab2024
class demo repository for advocating for community, dreamlab 2024
two-bladed-wind-turbines
This repository is supposed to share wind turbine models to use in Bladed, together with the controller files and respective turbine data from the German government-funded project "X-Rotor -- two-bladed wind turbines" with the research community.
thresholdqst
A Python library to implement threshold quantum state tomography for qubits.
logisticchain
The logistics platform model based on hyperledger fabric blockchain, complete simulation of the entire international shipping process.
PhenoFeatureFinder
PhenoFeatureFinder: a python package for linking developmental phenotypes to omics features - Published in JOSS (2024)
st4sd-olm
An Operator Lifecycle Manager (OLM) operator to automate installing and upgrading ST4SD deployments on OpenShift clusters
covid-campus-phylodynamics
Git Repo for the paper: On-Campus Dormitories as Viral Transmission Sinks: Phylodynamic Insights into Student Housing Networks During the COVID-19 Pandemic
ontology-overview-of-nfdi4cat
Repository which lists several ontologies relevant for catalysis research.