GitHub

https://github.com

Updated 10 months ago

@stdlib/stats-base-dmeankbn2 • Rank 3.8 • Science 57%

Calculate the arithmetic mean of a double-precision floating-point strided array using a second-order iterative Kahan–Babuška algorithm.

Updated 10 months ago

adleap-mas • Rank 3.8 • Science 57%

The AdLeap-MAS project proposes a new framework for implementing and simulating Ad-hoc reasoning environments. Built 100% in Python using the Open-AI Gym as its basis, we propose a component-based architecture to enable quick implementations to perform multi-agents systems experiments.

Updated 10 months ago

@stdlib/stats-base-snanstdevpn • Rank 3.8 • Science 57%

Calculate the standard deviation of a single-precision floating-point strided array ignoring NaN values and using a two-pass algorithm.

Updated 10 months ago

scifer • Rank 11.8 • Science 49%

Scifer: Single-Cell Immunoglobulin Filtering of Sanger Sequences

Updated 10 months ago

rockatlas • Rank 1.8 • Science 59%

A suite of tools to pull known solar-system small-body detections out of ATLAS data

Updated 10 months ago

daisiemainland • Rank 1.8 • Science 59%

Simulate phylogenetic data on islands with a evolving mainland pool

Updated 10 months ago

noria-ontology • Rank 3.8 • Science 57%

The NORIA-O project is a data model for IT networks, events and operations information. The ontology is developed using web technologies (e.g. RDF, OWL, SKOS) and is intended as a structure for realizing an IT Service Management (ITSM) Knowledge Graph (KG) for Anomaly Detection (AD) and Risk Management applications. The model has been developed in collaboration with operational teams, and in connection with third parties linked vocabularies.

Updated 10 months ago

@stdlib/blas-ext-base-dsnansumpw • Rank 3.8 • Science 57%

Calculate the sum of single-precision floating-point strided array elements, ignoring NaN values, using pairwise summation with extended accumulation, and returning an extended precision result.

Updated 10 months ago

datasets-herndon-venus-semidiameters • Rank 3.8 • Science 57%

Fifteen observations of the vertical semidiameter of Venus, made by Lieutenant Herndon, with the meridian circle at Washington, in the year 1846.

Updated 10 months ago

qgcomp • Rank 11.8 • Science 49%

QGcomp (quantile g-computation): estimating the effects of exposure mixtures. Works for continuous, binary, and right-censored survival outcomes. Flexible, unconstrained, fast and guided by modern causal inference principles

Updated 10 months ago

git2rdata • Rank 6.8 • Science 54%

An R package for storing and retrieving data.frames in git repositories.

Updated 10 months ago

astroaugmentations • Rank 6.8 • Science 54%

A package with various custom augmentations implemented which are specifically designed around astronomical data.

Updated 10 months ago

@stdlib/blas-ext-base-gasumpw • Rank 3.8 • Science 57%

Calculate the sum of absolute values (L1 norm) of strided array elements using pairwise summation.

Updated 10 months ago

lagrangian-filtering • Rank 3.8 • Science 57%

Temporal filtering of data in a Lagrangian frame of reference.

Updated 10 months ago

pandoc-website • Rank 6.8 • Science 54%

Source files for pandoc's website

Updated 10 months ago

scikit-surgerybk • Rank 6.8 • Science 54%

Interface for BK Medicial Ultrasound

Updated 10 months ago

pyjoules • Rank 6.7 • Science 54%

A Python library to capture the energy consumption of code snippets

Updated 10 months ago

osmose • Rank 6.7 • Science 54%

OSMOSE: Modelling Marine Exploited Ecosystems

Updated 10 months ago

@stdlib/blas-ext-base-snansumpw • Rank 3.7 • Science 57%

Calculate the sum of single-precision floating-point strided array elements, ignoring NaN values and using pairwise summation.

Updated 10 months ago

phyloplace • Rank 3.7 • Science 57%

nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.

Updated 10 months ago

@stdlib/stats-base-smeankbn • Rank 3.7 • Science 57%

Calculate the arithmetic mean of a single-precision floating-point strided array using an improved Kahan–Babuška algorithm.

Updated 10 months ago

neoantigen-pipeline • Rank 3.7 • Science 57%

Pipeline for computing neoantigen qualities from DNA and RNA-Seq data

Updated 10 months ago

Piccolo • Rank 6.7 • Science 54%

A Julia package for solving quantum optimal control problems using direct trajectory optimization.

Updated 10 months ago

gostrocks • Rank 6.7 • Science 54%

Geospatial tools from the World Bank GOST team

Updated 10 months ago

genbank-to • Rank 6.7 • Science 54%

Convert genbank files to a swath of other formats

Updated 10 months ago

PowerSimulations.jl • Rank 14.7 • Science 46%

Julia for optimization simulation and modeling of PowerSystems. Part of the Scalable Integrated Infrastructure Planning Initiative at the National Renewable Energy Lab.

Updated 10 months ago

ivy • Rank 6.7 • Science 54%

Course material on scientific software development for researchers in earth and planetary surface processes

Updated 10 months ago

@stdlib/blas-ext-base-sdsnansumpw • Rank 3.7 • Science 57%

Calculate the sum of single-precision floating-point strided array elements, ignoring NaN values and using pairwise summation with extended accumulation.

Updated 10 months ago

@stdlib/random-streams-minstd • Rank 3.7 • Science 57%

Create a readable stream for a linear congruential pseudorandom number generator (LCG) based on Park and Miller.

Updated 9 months ago

https://github.com/cbg-ethz/pangolin • Rank 3.7 • Science 57%

BSSE COVID-19 sequencing of test swab samples

Updated 9 months ago

https://github.com/cbg-ethz/lollipop • Rank 3.7 • Science 57%

Deconvolution for Wastewater Genomics

Updated 10 months ago

weighted-metapath2vec • Rank 3.7 • Science 57%

Weighted Metapath2Vec Graph Embedding

Scientific Software
Updated 10 months ago

ndbc-api — Peer-reviewed • Rank 11.7 • Science 49%

ndbc-api: Accelerating oceanography and climate science research with Python - Published in JOSS (2024)

Scientific Software · Peer-reviewed
Updated 10 months ago

adjustedCurves • Rank 11.7 • Science 49%

An R-Package to estimate and plot confounder-adjusted survival curves (single event survival data) and confounder-adjusted cumulative incidence functions (data with competing risks) using various methods.

Updated 10 months ago

@stdlib/blas-ext-base-ssort2hp • Rank 3.7 • Science 57%

Simultaneously sort two single-precision floating-point strided arrays based on the sort order of the first array using heapsort.

Updated 10 months ago

vivarium-public-health • Rank 14.7 • Science 46%

Vivarium microsimulation tools used to model diseases and interventions.

Updated 10 months ago

proteomicslfq • Rank 6.7 • Science 54%

Proteomics label-free quantification (LFQ) analysis pipeline

Updated 10 months ago

tocer • Rank 16.6 • Science 44%

A command line interface for generating Markdown table of contents.

Updated 10 months ago

qgg • Rank 11.6 • Science 49%

Statistical tools for Quantitative Genetic Analyses

Updated 10 months ago

camtrapR • Rank 11.6 • Science 49%

R package for camera trap data management

Updated 10 months ago

@stdlib/stats-base-smeanwd • Rank 3.6 • Science 57%

Calculate the arithmetic mean of a single-precision floating-point strided array using Welford's algorithm.

Updated 10 months ago

@stdlib/stats-base-dsmeanpw • Rank 3.6 • Science 57%

Calculate the arithmetic mean of a single-precision floating-point strided array using pairwise summation with extended accumulation and returning an extended precision result.

Updated 10 months ago

@stdlib/stats-base-dsempn • Rank 3.6 • Science 57%

Calculate the standard error of the mean for a double-precision floating-point strided array using a two-pass algorithm.

Updated 10 months ago

@stdlib/stats-base-smeanpn • Rank 3.6 • Science 57%

Calculate the arithmetic mean of a single-precision floating-point strided array using a two-pass error correction algorithm.

Updated 10 months ago

rnaseq • Rank 11.6 • Science 49%

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Updated 10 months ago

pycldf • Rank 14.6 • Science 46%

python package to read and write CLDF datasets

Updated 10 months ago

@stdlib/stats-base-dstdevyc • Rank 3.6 • Science 57%

Calculate the standard deviation of a double-precision floating-point strided array using a one-pass algorithm proposed by Youngs and Cramer.

Updated 10 months ago

@stdlib/stats-base-dsmeanwd • Rank 3.6 • Science 57%

Calculate the arithmetic mean of a single-precision floating-point strided array using Welford's algorithm with extended accumulation and returning an extended precision result.

Updated 10 months ago

dist_cov • Rank 1.6 • Science 59%

conditional distributions with covariates

Updated 10 months ago

HYBRID • Rank 6.6 • Science 54%

HYBRID is a modeling toolset to assess the integration and economic viability of Integrated Energy Systems (IES).

Updated 10 months ago

wikibasemigrator • Rank 6.6 • Science 54%

A Python module to migrate entities from one Wikibase instance to another

Updated 10 months ago

gridmeta • Rank 6.6 • Science 54%

A repository for extracting dehydrated metadata for distribution power grid model.

Updated 10 months ago

vipera • Rank 3.6 • Science 57%

A Snakemake workflow for SARS-CoV-2 Viral Intra-Patient Evolution Reporting and Analysis

Updated 10 months ago

@stdlib/stats-base-dsnanmeanpn • Rank 3.6 • Science 57%

Calculate the arithmetic mean of a single-precision floating-point strided array, ignoring NaN values, using a two-pass error correction algorithm with extended accumulation, and returning an extended precision result.

Updated 10 months ago

@stdlib/stats-base-dmeanwd • Rank 3.6 • Science 57%

Calculate the arithmetic mean of a double-precision floating-point strided array using Welford's algorithm.

Updated 10 months ago

spiR • Rank 3.6 • Science 57%

R package for the Social Progress Index

Updated 10 months ago

@stdlib/stats-base-dsemtk • Rank 3.6 • Science 57%

Calculate the standard error of the mean for a double-precision floating-point strided array using a one-pass textbook algorithm.

Updated 10 months ago

PlutoReport • Rank 6.6 • Science 54%

Make awesome reports and talk slides in Pluto!

Updated 10 months ago

spynal • Rank 6.6 • Science 54%

Spynal: The Simple Python Neural Analysis Library. The backbone of your neural data analysis pipeline.

Updated 10 months ago

starvz • Rank 11.6 • Science 49%

R-based visualization techniques for the StarPU runtime

Updated 10 months ago

https://github.com/exalearn/colmena • Rank 14.6 • Science 46%

Library for steering campaigns of simulations on supercomputers

Updated 10 months ago

awesome-drug-discovery-knowledge-graphs • Rank 6.6 • Science 54%

A collection of research papers, datasets and software related to knowledge graphs for drug discovery. Accompanies the paper "A review of biomedical datasets relating to drug discovery: a knowledge graph perspective" (Briefings in Bioinformatics, 2022)

Updated 10 months ago

basicvsr_plusplus • Rank 6.6 • Science 54%

Official repository of "BasicVSR++: Improving Video Super-Resolution with Enhanced Propagation and Alignment"

Updated 10 months ago

vimp • Rank 11.6 • Science 49%

Perform inference on algorithm-agnostic variable importance

Updated 10 months ago

@stdlib/blas-ext-base-sdsapxsumpw • Rank 3.6 • Science 57%

Adds a constant to each single-precision floating-point strided array element and computes the sum using pairwise summation with extended accumulation.

Updated 10 months ago

@stdlib/stats-base-snanstdevtk • Rank 3.6 • Science 57%

Calculate the standard deviation of a single-precision floating-point strided array ignoring NaN values and using a one-pass textbook algorithm.

Updated 10 months ago

sequence-model • Rank 6.6 • Science 54%

Python version of the Steckler Sequence model

Updated 10 months ago

osemosys_gnu_mathprog • Rank 6.6 • Science 54%

The GNU MathProg implementation of OSeMOSYS

Updated 10 months ago

wg-value • Rank 6.6 • Science 54%

CHAOSS Value Working Group

Updated 10 months ago

OpenSpecy • Rank 11.6 • Science 49%

Analyze, Process, Identify, and Share, Raman and (FT)IR Spectra

Updated 10 months ago

pyjac • Rank 9.6 • Science 51%

Creates C and CUDA analytical Jacobians for chemical kinetics ODE systems

Updated 10 months ago

oct-to-tiff • Rank 6.6 • Science 54%

A command line tool for converting optical coherence tomography angiography (OCTA) data.

Updated 10 months ago

mqt.predictor • Rank 11.5 • Science 49%

MQT Predictor - A Tool for Automatic Device Selection with Device-Specific Circuit Compilation for Quantum Computing

Updated 10 months ago

infomap • Rank 16.5 • Science 44%

Multi-level network clustering based on the Map Equation

Updated 10 months ago

@stdlib/stats-base-svarianceyc • Rank 3.5 • Science 57%

Calculate the variance of a single-precision floating-point strided array using a one-pass algorithm proposed by Youngs and Cramer.

Updated 10 months ago

@stdlib/stats-base-dnanvariancewd • Rank 3.5 • Science 57%

Calculate the variance of a double-precision floating-point strided array ignoring NaN values and using Welford's algorithm.

Updated 10 months ago

@stdlib/stats-base-dvarianceyc • Rank 3.5 • Science 57%

Calculate the variance of a double-precision floating-point strided array using a one-pass algorithm proposed by Youngs and Cramer.

Updated 10 months ago

@stdlib/random-iter-improved-ziggurat • Rank 3.5 • Science 57%

Create an iterator for generating pseudorandom numbers drawn from a standard normal distribution using the Improved Ziggurat algorithm.

Updated 10 months ago

modelicatableadditions • Rank 3.5 • Science 57%

📊 Extension of the CombiTable look-up table blocks of the Modelica Standard Library to additionally support cubic interpolation and reading of CSV, EPW (EnergyPlus Weather) and JSON files