GitHub
ladds
Large-scale Deterministic Debris Simulation - Codebase for the ARIADNA Study between TU Munich and ESA's Advanced Concepts Team.
https://github.com/ay-lab/mustache
Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation
nighthawk
Nighthawk is a machine learning model for acoustic monitoring of nocturnal bird migration.
https://github.com/arviz-devs/simuk
Simulation based calibration and generation of synthetic data.
https://github.com/cldf/cldfbench
Tooling to create CLDF datasets from existing data
odak
Scientific computing library for optics, computer graphics and visual perception.
https://github.com/bluebrain/atlas-alignment
Blue Brain multi-modal registration and alignment toolbox
panda-gazebo
A reinforcement learning-oriented Panda Emika Franka gazebo simulation.
egyptiancoffins
Egyptian Coffins website - Jekyll, material, bootstrap, jquery
pytorch-optimize
A simple black-box optimization framework to train your pytorch models for optimizing non-differentiable objectives
eprinttools
EPrintTools is a Go package, command line utilities and a service for working with EPrints 3.3.x EPrint XML and REST API
devonthink-hacks
Scripts and other things for working with DEVONthink, a personal information management system.
.github
Collection of default community health files, GitHub Action workflows, templates
https://github.com/bionf/fas
FAS - Tool for Feature Architecture Similarity calculation
http_downloader
PelemayBackend: A memory-saving, fault-tolerant and distributed collection of Nx compilers and backends for embedded systems.
mtscomp
Multichannel time series lossless compression in pure Python based on NumPy and zlib
librapid
A highly optimised C++ library for mathematical applications and neural networks.
castep-dispersion
CASTEP post processing for plotting bandstructures and phonon dispersions
latex-credits
A package for generating CRediT (Contributor Role Taxonomy) statements
sophon.jl
Efficient, Accurate, and Streamlined Training of Physics-Informed Neural Networks
py-alpaca-eval
An automatic evaluator for instruction-following language models. Human-validated, high-quality, cheap, and fast.
genomeskim
QC and filtering of genome skims, followed by organelle assembly and/or genome analysis
proteinn-structure-predictor
A transformer network trained to predict end-to-end single sequence protein structure as a set of angles given amino acid sequences.
gnss_rr
Continuous estimation of snow/firn accumulation, surface mass, and density on a moving surface using combined GNSS reflectometry/refractometry (GNSS-RR)}
acoustipy
Acoustic design exploration and material property identification for porous structures
planet
For inferring ancestry, gestational age, cell type proportions, and preeclampsia status from placental DNA methylation array data
https://github.com/pyro-ppl/numpyro
Probabilistic programming with NumPy powered by JAX for autograd and JIT compilation to GPU/TPU/CPU.
scikit-surgerycalibration
scikit-surgery-calibration provides algorithms designed for the calibration of surgical instruments
tstoolbox
Command line script and Python library to work with time-series data.
naplib-python
Tools and functions for neural data processing and analysis in python
sharp
R package sharp (Stability-enHanced Approaches using Resampling Procedures).
epicosm
Epidemiological Cohort Social Media: social media data linkage for birth cohorts
carpenter_workshop
Brian's python workshop, where he keeps his tools, paint, and anything else useful.
https://github.com/uf3/uf3
UF3: a python library for generating ultra-fast interatomic potentials
slm-code-generation
TensorFlow code for the neural network presented in the paper: "Structural Language Models of Code" (ICML'2020)
ChaProEV
This repository contains the ChaProEV (Charging Profiles of Electric Vehicles) model.
opendssdirect.py
OpenDSSDirect.py: a cross-platform Python package that implements a native/direct library interface to the alternative OpenDSS engine from DSS-Extensions.org
https://github.com/andrewtavis/poli-sci-kit
Political elections, appointment, analysis and visualization in Python
polarityjam
The feature extraction pipeline lets you extract relevant features from your image(s) and collect them in a csv file.
nibabies
fMRIPrep Lifespan - A robust, transparent workflow tailored for neonate and infant MRI
nanocount
EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
Grassmann
⟨Grassmann-Clifford-Hodge⟩ multilinear differential geometric algebra
hgvs
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
rl-llm-calibration-test
Attempt at replication of the parts of the paper "Language models (mostly) know what they know", on open datasets, and models.
metaextractor
A repository for the UBC MDS Capstone team to develop a metadata extractor for Neotoma
dicter
Python package with advanced dictionary functions. Traverse through nested dicts. Set and get multiple keys. Flattens dicts. Store and load in json and more!
https://github.com/critical-infrastructure-systems-lab/vicres
VIC-Res: Representation of water reservoir storage and operations in the Variable Infiltration Capacity (VIC) model
belay
Belay is a python library that enables the rapid development of projects that interact with hardware via a micropython-compatible board.
DECAES
DEcomposition and Component Analysis of Exponential Signals (DECAES) - a Julia implementation of the UBC Myelin Water Imaging (MWI) toolbox for computing voxelwise T2-distributions of multi spin-echo MRI images.
TREG
Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data
landsat-ml-cookbook
Machine learning on Landsat satellite data using open source tools
https://github.com/judftteam/aiida-fleur
AiiDA plugin of the high-performance density functional theory code FLEUR (www.judft.de) for high-throughput electronic structure calculations.
https://github.com/ant-research/easytemporalpointprocess
EasyTPP: Towards Open Benchmarking Temporal Point Processes
datools
A set of Data assimilation tools. Filter smoothers, ensemble and variational methods, localization, etc.
2018-11-19-manchester
SWC workshop for Clinical Genomics @Manchester, 19-20 November 2018