GitHub

https://github.com

Updated 10 months ago

nlp-processing • Science 44%

Updated 10 months ago

testing3 • Science 44%

Dummy description.

Scientific Software
Updated 10 months ago

An Introduction to prismAId — Peer-reviewed • Science 93%

An Introduction to prismAId: Open-Source and Open Science AI for Advancing Information Extraction in Systematic Reviews - Published in JOSS (2025)

Earth and Environmental Sciences (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

MRI-NUFFT — Peer-reviewed • Science 93%

MRI-NUFFT: Doing non-Cartesian MRI has never been easier - Published in JOSS (2025)

Mathematics (32%)
Scientific Software · Peer-reviewed
Updated 10 months ago

bffs • Science 44%

Scientific Software
Updated 10 months ago

constrained_manipulability — Peer-reviewed • Science 93%

constrained_manipulability: A ROS 2 library to Compute and Visualize Constrained Capacities for Robotic Manipulators - Published in JOSS (2025)

Engineering
Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

Slicer-Liver — Peer-reviewed • Science 93%

Slicer-Liver: A 3D Slicer Extension for Liver Surgery Planning - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

BREADR — Peer-reviewed • Science 93%

BREADR: An R Package for the Bayesian Estimation of Genetic Relatedness from Low-coverage Genotype Data - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Updated 10 months ago

rkhsregularization.jl • Science 44%

Light weight RKHS regularization (e.g. Gaussian process regression without statistical-considerations) tools with dimensional expansion kernels.

Updated 10 months ago

elasticity-controller-docker • Science 44%

Controlador de elasticidade para o TCC do 4 ano de Ciência da Computação na Unioeste

Scientific Software
Updated 10 months ago

fastfrechet — Peer-reviewed • Science 93%

fastfrechet: An R package for fast implementation of Fréchet regression with distributional responses - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Updated 10 months ago

vhdlmachines • Science 44%

The LLFSM Format for VHDL Machines.

Updated 10 months ago

cb2 • Science 44%

test site

dl
Scientific Software
Updated 10 months ago

PyRASA - Spectral parametrization in python based on IRASA — Peer-reviewed • Science 93%

PyRASA - Spectral parametrization in python based on IRASA - Published in JOSS (2025)

Scientific Software
Updated 10 months ago

G3F — Peer-reviewed • Science 93%

G3F: Global, Multidimensional Spectral Regression Analysis - Published in JOSS (2019)

Scientific Software · Peer-reviewed
Updated 10 months ago

cruzeiro-do-sul-database • Science 57%

Quati Beamline (Sirius-CNPEM) XAS database

Scientific Software
Updated 10 months ago

NMRInversions.jl, a Julia package for time-domain Nuclear Magnetic Resonance — Peer-reviewed • Science 98%

NMRInversions.jl, a Julia package for time-domain Nuclear Magnetic Resonance - Published in JOSS (2025)

Updated 10 months ago

scproximite • Science 67%

sc Proximity Evaluation (scProximitE) is a framework for evaluating proximity metric performance on scRNA-seq data properties.

Updated 10 months ago

edc-0-6-4 • Science 44%

Scientific Software
Updated 10 months ago

GraphBin-Tk — Peer-reviewed • Science 93%

GraphBin-Tk: assembly graph-based metagenomic binning toolkit - Published in JOSS (2025)

Biology
Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

openmpp — Peer-reviewed • Science 93%

openmpp: An R package for dynamic microsimulation modeling using OpenM++ - Published in JOSS (2025)

Earth and Environmental Sciences (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

Carnival — Peer-reviewed • Science 93%

Carnival: JVM Property graph data unification toolkit - Published in JOSS (2025)

Scientific Software
Updated 10 months ago

SPARC-X-API — Peer-reviewed • Science 93%

SPARC-X-API: Versatile Python Interface for Real-space Density Functional Theory Calculations - Published in JOSS (2025)

Materials Science
Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

QuantumReservoirPy — Peer-reviewed • Science 93%

QuantumReservoirPy: A Software Package for Time Series Prediction - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

quanteda — Peer-reviewed • Science 95%

quanteda: An R package for the quantitative analysis of textual data - Published in JOSS (2018)

Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

Limace.jl — Peer-reviewed • Science 93%

Limace.jl: A Julia package to compute hydromagnetic modes in spherical domains - Published in JOSS (2025)

Mathematics (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

A Julia package for bilevel optimization problems — Peer-reviewed • Science 98%

A Julia package for bilevel optimization problems - Published in JOSS (2019)

Updated 10 months ago

mrimate • Science 44%

Scientific Software
Updated 10 months ago

HeXtractor — Peer-reviewed • Science 93%

HeXtractor: Extracting Heterogeneous Graphs from Structured and Textual Data for Graph Neural Networks - Published in JOSS (2025)

Mathematics Artificial Intelligence and Machine Learning
Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

kifmm-rs — Peer-reviewed • Science 93%

kifmm-rs: A Kernel-Independent Fast Multipole Framework in Rust - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Updated 10 months ago

icra_2023 • Science 44%

This is the repository containing the codes we used in our ICRA23 paper.

Scientific Software
Updated 10 months ago

ConFluxPro — Peer-reviewed • Science 93%

ConFluxPro: A toolkit for soil gas analysis - Published in JOSS (2025)

Engineering (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

Compare Expression Profiles for Pre-defined Gene Groups with C-REx — Peer-reviewed • Science 95%

Compare Expression Profiles for Pre-defined Gene Groups with C-REx - Published in JOSS (2019)

Neuroscience
Scientific Software · Peer-reviewed
Updated 10 months ago

test565 • Science 44%

test repository

Updated 10 months ago

ctxform • Science 57%

Equivalence checker for contextual formulas

Scientific Software
Updated 10 months ago

NanoVer Server — Peer-reviewed • Science 98%

NanoVer Server: A Python Package for Serving Real-Time Multi-User Interactive Molecular Dynamics in Virtual Reality - Published in JOSS (2025)

Computer Science (33%)
Scientific Software · Peer-reviewed
Updated 10 months ago

edirom-window • Science 44%

Updated 10 months ago

kaai_gaze • Science 54%

Scientific Software
Updated 10 months ago

Blobmodel — Peer-reviewed • Science 93%

Blobmodel: A Python package for generating superpositions of pulses in one and two dimensions - Published in JOSS (2025)

Earth and Environmental Sciences Engineering (40%)
Scientific Software · Peer-reviewed
Updated 10 months ago

sequentialegm • Science 44%

Scientific Software
Updated 10 months ago

HySetter — Peer-reviewed • Science 93%

HySetter: A Python Package for Reproducible Hydroclimate Data Subsetting over CONUS - Published in JOSS (2025)

Political Science
Scientific Software · Peer-reviewed
Updated 10 months ago

ti-1-pmg-cc-t-20241-patinhas-felizes • Science 44%

ti-1-pmg-cc-t-20241-patinhas-felizes created by GitHub Classroom

Scientific Software
Updated 10 months ago

Sugar — Peer-reviewed • Science 98%

Sugar: A Python framework for bioinformatics - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

seabreeze — Peer-reviewed • Science 87%

seabreeze: A Pipeline for Analyzing Structural Variation Between Bacterial Genome Assemblies - Published in JOSS (2025)

Updated 10 months ago

pyccus-public • Science 44%

This is an in-house toolbox developed by SUETRI-A research group.

Updated 10 months ago

unsafe • Science 57%

A package for adding parametric uncertainty to the national structure inventory and estimating flood losses with uncertain depth-damage relationships

Updated 10 months ago

pmv-si-2024-1-pe1-t3-si_t3_app_web_1osem2024_gp02 • Science 44%

pmv-si-2024-1-pe1-t3-si_t3_app_web_1osem2024_gp02 created by GitHub Classroom

Scientific Software
Updated 10 months ago

ConleyDynamics.jl — Peer-reviewed • Science 98%

ConleyDynamics.jl: A Julia package for multivector dynamics on Lefschetz complexes - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

PyCCEA — Peer-reviewed • Science 93%

PyCCEA: A Python package of cooperative co-evolutionary algorithms for feature selection in high-dimensional data - Published in JOSS (2025)

Scientific Software
Updated 10 months ago

simulacrumWorkflowR — Peer-reviewed • Science 49%

simulacrumWorkflowR: An R package for Streamlined Access and Analysis of the Simulacrum Cancer Dataset - Published in JOSS (2025)

Earth and Environmental Sciences (40%)
Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

asyncmd — Peer-reviewed • Science 98%

asyncmd: A python library to orchestrate complex molecular dynamics simulation campaigns on high performance computing systems - Published in JOSS (2025)

Updated 10 months ago

programa-deteccion-oopart-gcpds • Science 44%

Programa de detección y análisis del tráfico vehicular y peatonal

Updated 10 months ago

pythia • Science 75%

A customizable hardware prefetching framework using online reinforcement learning as described in the MICRO 2021 paper by Bera et al. (https://arxiv.org/pdf/2109.12021.pdf).

Scientific Software
Updated 10 months ago

PyBispectra — Peer-reviewed • Science 98%

PyBispectra: A toolbox for advanced electrophysiological signal processing using the bispectrum - Published in JOSS (2025)

Updated 10 months ago

statcan-dialogue-dataset • Science 54%

The StatCan Dialogue Dataset: Retrieving Data Tables through Conversations with Genuine Intents

Scientific Software
Updated 10 months ago

NADI -- Network Analysis and Data Integration with a Domain Specific Language — Peer-reviewed • Science 98%

NADI -- Network Analysis and Data Integration with a Domain Specific Language - Published in JOSS (2025)

Scientific Software
Updated 10 months ago

Salt — Peer-reviewed • Science 93%

Salt: Multimodal Multitask Machine Learning for High Energy Physics - Published in JOSS (2025)

Scientific Software · Peer-reviewed
Scientific Software
Updated 10 months ago

OperationsResearchModels.jl — Peer-reviewed • Science 93%

OperationsResearchModels.jl: A Julia package for operations research models - Published in JOSS (2025)

Updated 10 months ago

stock-performance-spin-off-subsidiaries-parents-etf • Science 44%

Paris-Dauphine University project for the course API Bloomberg. The aim is to replicate the research paper : "The Stock Price Performance of Spin-Off Subsidiaries, Their Parents, and the Spin-Off ETF, 2001-2013" by JOHN J. MCCONNELL, STEVEN E. SIBLEY, AND WEI XU.

Scientific Software
Updated 10 months ago

swsc — Peer-reviewed • Science 93%

swsc: A sitewise UCE partitioner - Published in JOSS (2019)

Scientific Software
Updated 10 months ago

TASOPT.jl — Peer-reviewed • Science 96%

TASOPT.jl: A Julia package for conceptual commercial transport aircraft design - Published in JOSS (2025)

Economics (40%)
Scientific Software · Peer-reviewed
Updated 10 months ago

coneonachair.github.io • Science 44%

Our very own website

Updated 10 months ago

terraform • Science 44%

IaC approach to manage resources in a OTC Cloud

Updated 10 months ago

kleine_geistliche_konzerte • Science 57%

https://dcmlab.github.io/kleine_geistliche_konzerte/

Updated 10 months ago

uaaphotos-demo • Science 44%

Demo of CB GH with UAA photographs from IA

Updated 10 months ago

mdmc-public • Science 52%

Updated 10 months ago

aquavida • Science 44%

Updated 10 months ago

birdradar • Science 44%

Updated 10 months ago

sphingolipidsid.jl • Science 44%

Automatic identify sphingolipids through PreIS and MRM

Updated 10 months ago

tabular.gen.cluster_based • Science 44%

TNO PET Lab - Synthetic Data Generation (SDG) - Tabular - Generation - Cluster Based

Updated 10 months ago

url-title.sh • Science 67%

Get title of a URL from its HTML.

Updated 10 months ago

30678 • Science 44%

Updated 10 months ago

gstat • Science 57%

Geostatistical analysis of oceanographic and meteorological datasets

Scientific Software
Updated 10 months ago

NeuNorm — Peer-reviewed • Science 95%

NeuNorm: Neutron Imaging Normalization Library - Published in JOSS (2018)

Mathematics (37%)
Scientific Software · Peer-reviewed
Updated 10 months ago

gwservice • Science 57%

Docker for georeferenced web services (gwservice)

Updated 10 months ago

calcseadensity • Science 67%

Computes seawater density from salinity, temperature, and depth

Updated 10 months ago

driftviewer • Science 67%

Software to extract and analyze data from NOAA drifters

Updated 10 months ago

lss • Science 44%

Updated 10 months ago

defaultkeywordarguments.jl • Science 44%

A package to handle default keyword arguments in Julia

Updated 10 months ago

ipa-2022-docs • Science 44%

IPA report/documentation for the Renuo Assessment-Assistant project

Updated 10 months ago

vispy • Science 67%

Main repository for Vispy

Updated 10 months ago

normalizingflowfilters.jl • Science 44%

NormalizingFlowFilters

Updated 10 months ago

behave • Science 44%

Updated 10 months ago

inspire-hep • Science 44%

Fetch citations and self-excluded citations for each article

Updated 10 months ago

bafe-net • Science 54%

Updated 10 months ago

2025-09-22-hida-online • Science 44%

Course website for the HIDA workshop on Shell and Git on September 22 and 23, 2025

Updated 10 months ago

pyet • Science 67%

:sunflower: pyet is a Python package to estimate reference and potential evaporation.

Updated 10 months ago

intelliperf • Science 67%

Automated bottleneck detection and solution orchestration

Updated 10 months ago

oncosharp • Science 44%