GitHub
An Introduction to prismAId
An Introduction to prismAId: Open-Source and Open Science AI for Advancing Information Extraction in Systematic Reviews - Published in JOSS (2025)
MRI-NUFFT
MRI-NUFFT: Doing non-Cartesian MRI has never been easier - Published in JOSS (2025)
constrained_manipulability
constrained_manipulability: A ROS 2 library to Compute and Visualize Constrained Capacities for Robotic Manipulators - Published in JOSS (2025)
Slicer-Liver
Slicer-Liver: A 3D Slicer Extension for Liver Surgery Planning - Published in JOSS (2025)
BREADR
BREADR: An R Package for the Bayesian Estimation of Genetic Relatedness from Low-coverage Genotype Data - Published in JOSS (2025)
rkhsregularization.jl
Light weight RKHS regularization (e.g. Gaussian process regression without statistical-considerations) tools with dimensional expansion kernels.
elasticity-controller-docker
Controlador de elasticidade para o TCC do 4 ano de Ciência da Computação na Unioeste
fastfrechet
fastfrechet: An R package for fast implementation of Fréchet regression with distributional responses - Published in JOSS (2025)
PyRASA - Spectral parametrization in python based on IRASA
PyRASA - Spectral parametrization in python based on IRASA - Published in JOSS (2025)
G3F
G3F: Global, Multidimensional Spectral Regression Analysis - Published in JOSS (2019)
NMRInversions.jl, a Julia package for time-domain Nuclear Magnetic Resonance
NMRInversions.jl, a Julia package for time-domain Nuclear Magnetic Resonance - Published in JOSS (2025)
scproximite
sc Proximity Evaluation (scProximitE) is a framework for evaluating proximity metric performance on scRNA-seq data properties.
GraphBin-Tk
GraphBin-Tk: assembly graph-based metagenomic binning toolkit - Published in JOSS (2025)
openmpp
openmpp: An R package for dynamic microsimulation modeling using OpenM++ - Published in JOSS (2025)
Carnival
Carnival: JVM Property graph data unification toolkit - Published in JOSS (2025)
SPARC-X-API
SPARC-X-API: Versatile Python Interface for Real-space Density Functional Theory Calculations - Published in JOSS (2025)
QuantumReservoirPy
QuantumReservoirPy: A Software Package for Time Series Prediction - Published in JOSS (2025)
quanteda
quanteda: An R package for the quantitative analysis of textual data - Published in JOSS (2018)
Limace.jl
Limace.jl: A Julia package to compute hydromagnetic modes in spherical domains - Published in JOSS (2025)
A Julia package for bilevel optimization problems
A Julia package for bilevel optimization problems - Published in JOSS (2019)
HeXtractor
HeXtractor: Extracting Heterogeneous Graphs from Structured and Textual Data for Graph Neural Networks - Published in JOSS (2025)
kifmm-rs
kifmm-rs: A Kernel-Independent Fast Multipole Framework in Rust - Published in JOSS (2025)
icra_2023
This is the repository containing the codes we used in our ICRA23 paper.
ConFluxPro
ConFluxPro: A toolkit for soil gas analysis - Published in JOSS (2025)
Compare Expression Profiles for Pre-defined Gene Groups with C-REx
Compare Expression Profiles for Pre-defined Gene Groups with C-REx - Published in JOSS (2019)
NanoVer Server
NanoVer Server: A Python Package for Serving Real-Time Multi-User Interactive Molecular Dynamics in Virtual Reality - Published in JOSS (2025)
Blobmodel
Blobmodel: A Python package for generating superpositions of pulses in one and two dimensions - Published in JOSS (2025)
ti-1-pmg-cc-t-20241-patinhas-felizes
ti-1-pmg-cc-t-20241-patinhas-felizes created by GitHub Classroom
Sugar
Sugar: A Python framework for bioinformatics - Published in JOSS (2025)
seabreeze
seabreeze: A Pipeline for Analyzing Structural Variation Between Bacterial Genome Assemblies - Published in JOSS (2025)
pyccus-public
This is an in-house toolbox developed by SUETRI-A research group.
unsafe
A package for adding parametric uncertainty to the national structure inventory and estimating flood losses with uncertain depth-damage relationships
pmv-si-2024-1-pe1-t3-si_t3_app_web_1osem2024_gp02
pmv-si-2024-1-pe1-t3-si_t3_app_web_1osem2024_gp02 created by GitHub Classroom
ConleyDynamics.jl
ConleyDynamics.jl: A Julia package for multivector dynamics on Lefschetz complexes - Published in JOSS (2025)
PyCCEA
PyCCEA: A Python package of cooperative co-evolutionary algorithms for feature selection in high-dimensional data - Published in JOSS (2025)
simulacrumWorkflowR
simulacrumWorkflowR: An R package for Streamlined Access and Analysis of the Simulacrum Cancer Dataset - Published in JOSS (2025)
asyncmd
asyncmd: A python library to orchestrate complex molecular dynamics simulation campaigns on high performance computing systems - Published in JOSS (2025)
programa-deteccion-oopart-gcpds
Programa de detección y análisis del tráfico vehicular y peatonal
pythia
A customizable hardware prefetching framework using online reinforcement learning as described in the MICRO 2021 paper by Bera et al. (https://arxiv.org/pdf/2109.12021.pdf).
PyBispectra
PyBispectra: A toolbox for advanced electrophysiological signal processing using the bispectrum - Published in JOSS (2025)
statcan-dialogue-dataset
The StatCan Dialogue Dataset: Retrieving Data Tables through Conversations with Genuine Intents
NADI -- Network Analysis and Data Integration with a Domain Specific Language
NADI -- Network Analysis and Data Integration with a Domain Specific Language - Published in JOSS (2025)
Salt
Salt: Multimodal Multitask Machine Learning for High Energy Physics - Published in JOSS (2025)
OperationsResearchModels.jl
OperationsResearchModels.jl: A Julia package for operations research models - Published in JOSS (2025)
stock-performance-spin-off-subsidiaries-parents-etf
Paris-Dauphine University project for the course API Bloomberg. The aim is to replicate the research paper : "The Stock Price Performance of Spin-Off Subsidiaries, Their Parents, and the Spin-Off ETF, 2001-2013" by JOHN J. MCCONNELL, STEVEN E. SIBLEY, AND WEI XU.
swsc
swsc: A sitewise UCE partitioner - Published in JOSS (2019)
TASOPT.jl
TASOPT.jl: A Julia package for conceptual commercial transport aircraft design - Published in JOSS (2025)
kleine_geistliche_konzerte
https://dcmlab.github.io/kleine_geistliche_konzerte/
tabular.gen.cluster_based
TNO PET Lab - Synthetic Data Generation (SDG) - Tabular - Generation - Cluster Based
NeuNorm
NeuNorm: Neutron Imaging Normalization Library - Published in JOSS (2018)
calcseadensity
Computes seawater density from salinity, temperature, and depth
defaultkeywordarguments.jl
A package to handle default keyword arguments in Julia
ipa-2022-docs
IPA report/documentation for the Renuo Assessment-Assistant project
2025-09-22-hida-online
Course website for the HIDA workshop on Shell and Git on September 22 and 23, 2025
pyet
:sunflower: pyet is a Python package to estimate reference and potential evaporation.
slicer
Multi-platform, free open source software for visualization and image computing.