pyrexMD — Peer-reviewed • Rank 1.8 • Science 67%

pyrexMD: Workflow-Orientated Python Package for Replica Exchange Molecular Dynamics - Published in JOSS (2021)

sari-hospitalisierungsinzidenz • Rank 1.8 • Science 67%

Zur Einschätzung der Krankheitslast schwerer symptomatischer Atemwegsinfektionen im stationären Bereich wird mithilfe von Daten aus der syndromischen Krankenhaussurveillance ICOSARI die Inzidenz der Fälle, die mit einer schweren akuten respiratorischen Infektion (SARI) in ein Krankenhaus zur Behandlung aufgenommen wurden, pro 100.000 Einwohner b...

epitome • Rank 1.8 • Science 67%

🐍 Demonstration Python package using the PDS template

english-text-normalization • Rank 1.8 • Science 67%

Command-line interface (CLI) and library to normalize English texts.

omopvocabmapper.jl • Rank 1.8 • Science 67%

genbankpy • Rank 1.8 • Science 67%

Tools to download, parse and filter GenBank files

jupitermag • Rank 1.8 • Science 67%

Jupiter magnetic field model(s)

figures • Rank 1.8 • Science 67%

reproducibility-icwsm25 • Rank 1.8 • Science 67%

Materials for the 2025 ICWSM workshop sessions on Computational Reproducibility and the Methods Hub

polygeist-script • Rank 4.8 • Science 64%

HCubature • Rank 14.8 • Science 54%

pure-Julia multidimensional h-adaptive integration

https://github.com/arjunsavel/simmer • Rank 9.8 • Science 59%

An open-source & modular reduction pipeline for astronomical images of point sources.

fmi4cpp • Rank 6.8 • Science 62%

FMI 2.0 implementation written in modern C++.

SteadyStateDiffEq • Rank 14.8 • Science 54%

Solvers for steady states in scientific machine learning (SciML)

dataciteapi • Rank 3.7 • Science 65%

A Golang package and command line utility for working with the public DataCite API

fastrag • Rank 14.7 • Science 54%

Efficient Retrieval Augmentation and Generation Framework

brainweb • Rank 9.7 • Science 59%

BrainWeb: Multimodal models of 20 normal brains

skopeui • Rank 4.7 • Science 64%

SKOPE user interface and visualization app

euphonic • Rank 14.7 • Science 54%

Euphonic is a Python package for efficient simulation of phonon bandstructures, density of states and inelastic neutron scattering intensities from force constants.

qupulse • Rank 14.7 • Science 54%

Quantum Computing Toolkit for Qubit Control

https://github.com/clima/climacore.jl • Rank 14.7 • Science 54%

CliMA model dycore

GGally • Rank 22.7 • Science 46%

R package that extends ggplot2

rethnicity • Rank 9.7 • Science 59%

predict ethnicity from names

wntr • Rank 19.7 • Science 49%

An EPANET compatible python package to simulate and analyze water distribution networks under disaster scenarios.

openpifpaf • Rank 17.7 • Science 51%

Official implementation of "OpenPifPaf: Composite Fields for Semantic Keypoint Detection and Spatio-Temporal Association" in PyTorch.

smoove • Rank 14.7 • Science 54%

structural variant calling and genotyping with existing tools, but, smoothly.

https://github.com/astropy/reproject • Rank 19.7 • Science 49%

Python-based Astronomical image reprojection :milky_way: - maintainer @astrofrog

metacg • Rank 6.7 • Science 62%

MetaCG offers an annotated whole program call-graph tool for Clang/LLVM.

ckanext-status • Rank 6.7 • Science 62%

A CKAN extension that adds a 'status' bar to the top of the page.

pycapsid • Rank 9.7 • Science 59%

Python package to extract quasi-rigid domains in protein shells and other macromolecular complexes.

ddpo-overopt • Rank 4.6 • Science 64%

imp • Rank 9.6 • Science 59%

The Integrative Modeling Platform

awesome-remote-sensing-change-detection • Rank 9.6 • Science 59%

List of datasets, codes, and contests related to remote sensing change detection

pds.deeparchive • Rank 9.6 • Science 59%

PDS Open Archival Information System (OAIS) utilities, including Submission Information Package (SIP) and Archive Information Package (AIP) generators

standR • Rank 14.6 • Science 54%

Spatial transcriptomics analyses and decoding in R

edu.arizona.sista:processors_2.11 • Rank 14.6 • Science 54%

Natural Language Processors

actualizer • Rank 1.6 • Science 67%

[MIRROR] A Simple, Single Shell Script Solution to Create Lean, Secure, Upstream Compliant, and Customizable Debian from the ground up.

expresscommands.jl • Rank 1.6 • Science 67%

The command-line interface of Express.jl

proposaltemplate • Rank 1.6 • Science 67%

Research Proposal Template

grubclub • Rank 1.6 • Science 67%

Printed circuit board and 3D-printed arena designs for grubClub

edfi • Rank 1.6 • Science 67%

:earth_asia: EDFI is an open-source script to extract data from a 2D or 3D image.

mecup • Rank 1.6 • Science 67%

Melting Curve Profiler (MeCuP) - a tool for thermal protein profiling

SugarKelp • Rank 1.6 • Science 67%

Model of Saccharina latissima (sugar kelp) based on Broch and Slagstad, 2012

dde • Rank 1.6 • Science 67%

Pure Demand Operational Semantics

nanite • Rank 1.6 • Science 67%

A streamlined Oxford Nanopore Viral Metagenomics Pipeline

snhic • Rank 1.6 • Science 67%

Snakemake pipeline for analysis and normalization of Hi-C data starting from fastq.gz files. It includes the possibility to perform grouped analyses, TAD, loops and stripes detections, as well as differential compartment and chromatin interaction analyses.

louvain-communities-openmp-dynamic • Rank 1.6 • Science 67%

Design of OpenMP-based Parallel Dynamic Louvain algorithm for community detection.

fprime • Rank 14.6 • Science 54%

F´ - A flight software and embedded systems framework

kipper • Rank 14.6 • Science 54%

The Kipper programming language for comprehensive and all-round type safety on the web 🦊✨ Made at HTL Leonding & JKU Linz

https://github.com/clima/cloudmicrophysics.jl • Rank 11.6 • Science 57%

A library of cloud microphysics parameterizations

thesisart.jl • Rank 4.6 • Science 64%

ThesisArt.jl

dmipy • Rank 11.6 • Science 57%

The open source toolbox for reproducible diffusion MRI-based microstructure estimation

coolprop • Rank 14.6 • Science 54%

Thermophysical properties for the masses

somoclu • Rank 14.6 • Science 54%

Massively parallel self-organizing maps: accelerate training on multicore CPUs, GPUs, and clusters

MatchIt • Rank 19.6 • Science 49%

R package MatchIt

https://github.com/chaoss/grimoirelab • Rank 19.6 • Science 49%

GrimoireLab: platform for software development analytics and insights

napari-ome-zarr • Rank 14.6 • Science 54%

A napari plugin for zarr backed OME-NGFF images

progit2 • Rank 14.6 • Science 54%

Pro Git 2nd Edition

sw4 • Rank 9.6 • Science 59%

SW4 (Seismic Waves, 4th order) implements substantial capabilities for 3-D seismic modeling, with a free surface condition on the top boundary, absorbing super-grid conditions on the far-field boundaries, and an arbitrary number of point force and/or point moment tensor source terms.

rfishbase • Rank 19.6 • Science 49%

R interface to the fishbase.org database

pypianoroll • Rank 14.6 • Science 54%

A toolkit for working with piano rolls

https://github.com/cloudslab/cloudsim • Rank 9.5 • Science 59%

CloudSim: A Framework For Modeling And Simulation Of Cloud Computing Infrastructures And Services

sequali • Rank 11.5 • Science 57%

Fast sequencing data quality metrics

enzyme • Rank 11.5 • Science 57%

High-performance automatic differentiation of LLVM and MLIR.

polylabel • Rank 24.5 • Science 44%

A fast algorithm for finding the pole of inaccessibility of a polygon (in JavaScript and C++)

pyfri • Rank 4.5 • Science 64%

KUKA Fast Robot Interface Python SDK.

pxblat • Rank 9.5 • Science 59%

PxBLAT: An Efficient and Ergonomic Python Binding Library for BLAT

cbsodata • Rank 14.5 • Science 54%

Unofficial Statistics Netherlands (CBS) open data API client for Python

duello • Rank 9.5 • Science 59%

Osmotic second virial coefficient (𝐵₂) and dissociation constant (𝐾𝑑) for two rigid macromolecules

StaticArrayInterface • Rank 14.5 • Science 54%

Interface designs for enforcing static computations in array functions with Julia

blobctrl • Rank 4.5 • Science 64%

[Arxiv'25] BlobCtrl: A Unified and Flexible Framework for Element-level Image Generation and Editing

nimblesmc • Rank 9.5 • Science 59%

Sequential Monte Carlo methods for NIMBLE

pipedream • Rank 9.5 • Science 59%

🚰 Interactive hydrodynamic solver for pipe and channel networks

leaflet-geoserver-request • Rank 14.5 • Science 54%

This is the leaflet plugin for GeoServer. Using this plugin user can have access to wms and wfs request easily.

DIscBIO • Rank 14.5 • Science 54%

A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics

pokapi • Rank 6.5 • Science 62%

Simple Python object-oriented interface for getting records from FOLIO

pymialsrtk • Rank 9.5 • Science 59%

The Medical Image Analysis Laboratory Super-Resolution ToolKit (MIALSRTK) consists of a set of C++ and Python processing and workflow tools necessary to perform motion-robust super-resolution fetal MRI reconstruction in the BIDS Apps framework.

hyphe • Rank 9.4 • Science 59%

Websites crawler with built-in exploration and control web interface

gettsim • Rank 14.4 • Science 54%

The GErman Taxes and Transfers SIMulator

sbmlsim • Rank 9.4 • Science 59%

sbmlsim: SBML simulation made easy

amides • Rank 4.4 • Science 64%

An Adaptive Misuse Detection System

cosymlib • Rank 9.4 • Science 59%

Documentation

montecarlomeasurements.jl • Rank 14.4 • Science 54%

Propagation of distributions by Monte-Carlo sampling: Real number types with uncertainty represented by samples.

scattertext • Rank 19.4 • Science 49%

Beautiful visualizations of how language differs among document types.

secsse • Rank 9.4 • Science 59%

Several Examined and Concealed States-dependent Speciation and Extinction

phylodm • Rank 14.4 • Science 54%

Efficient calculation of phylogenetic distance matrices.

mbari-pbp • Rank 11.4 • Science 57%

Process ocean audio data archives to daily analysis products of hybrid millidecade spectra using PyPAM.

@liascript/editor • Rank 14.4 • Science 54%

Interpreter for interactive educational content, written in an extended Markdown format...

eprints2archives • Rank 6.4 • Science 62%

Send records from an EPrints server to the Internet Archive and other web archives

voc4fun-server • Rank 1.4 • Science 67%

A mobile application featuring a flashcard learning system with a self-regulating learning mechanism. It dynamically adjusts daily goals based on the learner's progress.

arrow-streams • Rank 1.4 • Science 67%

Example code for a text on monoidal streams

socrates • Rank 1.4 • Science 67%

Code and supplementary material for "SOCRATES: Introducing Depth in Visual Wildlife Monitoring using Stereo Vision" (WIP)

arch2018_re • Rank 1.4 • Science 67%

Repeatability Evaluation package for the ARCH2018 Competition

biodt-fair • Rank 1.4 • Science 67%

Documentation, resources, and other materials related to FAIR and open science from the BioDT project.

prisma-flow-diagram • Rank 1.4 • Science 67%

This package provides an abstraction for creating PRISMA 2009 flow diagrams in LaTeX.

mir-seek • Rank 1.4 • Science 67%

An awesome microRNA-sequencing pipeline

myriam • Rank 1.4 • Science 67%

MYRIAM is an open-access, computationally-inexpensive, user-friendly software that allow users to compute the torque variations required to produce given changes in plate motions.

stars-reproduce-allen-2020 • Rank 1.4 • Science 67%

Test-run of our reproducibility protocol on Allen et al. 2020: "A simulation modelling toolkit for organising outpatient dialysis services during the COVID-19 pandemic"

proteinfertorch • Rank 1.4 • Science 67%

Unofficial PyTorch version of ProteInfer, originally implemented in TensorFlow 1.X and converted for PyTorch compatibility.

osmnx-paper • Rank 1.4 • Science 67%

The OSMnx reference paper and official citation