GitHub
qdarts
Efficient Simulation of Charge Transitions in Quantum Dot Arrays with Sensor Dots, Tunnel Couplings, and Variable Charging Energy
jupyter
Jupyter notebooks - A tool to write and share executable notebooks and data visualization
rbvfit
A Bayesian Voigt profile fitter. Optimized for absorption line analysis.
https://github.com/dimits-ts/visualization-team-project
Team project visualizing various views for an established bike-sharing company. Includes a written report, presentation, R-code and Tableau files
scrnaseq-cellcomm-pipeline
Pipeline for inferring cell-cell interactions from scRNAseq data using multiple publicly available tools.
abmanimalmovement
The abmAnimalMovement simulates animal movement use a discrete time agent-based model, programmed in C++ via the Rcpp package. The simulations include a number of key internal and external movement influences, as well as parameters for navigation and mobility capacity of the animal.
climkern
Python package for easily computing climate feedbacks using radiative kernels.
multispectral-potato-plants-images
A Dataset of Multispectral Potato Plants Images
cogload_beforeJATOS
This repository contains the code of the experience that will test the effect of an n-back task on different cognitive processes. The N-back task is based on the work of Teodora Vékony and Bastien Blain.
grogupy
Python package calculating relativistic magnetic interactions for the generalised Heisenberg model.
https://github.com/dimits-ts/large-text-nlp-survey
A survey paper exploring the use of state-of-the-art deep neural network architectures in NLP problems featuring very large documents.
d18o-ivc-sw
Compute oxygen-isotope chronologies for seawater from forams in sediment cores: ice-volume and temperature corrected
linklittogbifid
A script to link publications citing GBIF downloads to specimens
efda_movementsignalalignment
A user-friendly Matlab code wrapping and demonstrating some of "fdasrvf" functions for elastic alignment of movement signals.
ssfg
Spatial-Spectral Feature Guidance Network for Fine-Grained Object Detection and Recognition on Complex-Valued SAR Images
swift-homomorphic-encryption
Homomorphic Encryption library and applications in Swift
psych_fucntion
Software for psychometric function measurement and data analysis
pymantra
Metabolic Reaction Analysis and Multi-Omics Associations from Untargeted Metabolomics
thalamocortical
GitHub repository for an OSB project containing a thalamocortical network model based on Traub et al. 2005
omicsgenetraitassociation
A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis
gempy
GemPy is an open-source, Python-based 3-D structural geological modeling software, which allows the implicit (i.e. automatic) creation of complex geological models from interface and orientation data. It also offers support for stochastic modeling to address parameter and model uncertainties.
3d_printed_spacers
This Repository contains designs for 3D printed spacers for the cube extentions
metagenomicspipeline
shotgun metagenomics pipeline to obtain relative abundances and pathway abundances
taxonopy
A Python package for efficiently aligning organismal taxonomic hierarchies using the Global Names Verifier
hibridon
Hibridon is a program package to solve the close-coupled equations which occur in the quantum treatment of inelastic atomic and molecular collisions. Gas-phase scattering, photodissociation, collisions of atoms and/or molecules with flat surfaces, and bound states of weakly-bound complexes can be treated
visualisingattentionmapsvqa
Website where I demonstrate different methods of visualising different attention maps as evidence for Visual Question Answering
@effekt-lang/effekt
A language with lexical effect handlers and lightweight effect polymorphism
stats-strided-dsmeanpw
Calculate the arithmetic mean of a single-precision floating-point strided array using pairwise summation with extended accumulation and returning an extended precision result.
stats-strided-dsem
Calculate the standard error of the mean for a double-precision floating-point strided array.
science-impacts-industry
Science Impacts Industry: Investigating the Relationship Between Scientific Advancements and Industrial Funding
3dobjectreconstruction
3D Object Reconstruction project is a workflow that takes a set of stereo images and camera info and outputs a textured mesh (i.e., .OBJ file). The purpose is to translate physical items into the digital world in a photorealistic way
parsnips
Generate, search, and cite SWHIDs for Python code fragments like classes, functions, and expressions.
domino
A software package for connecting cell level features in single cell RNA sequencing data with receptor ligand activity. Please be aware that an improved package, dominoSignal, is available.
eplant_plant_efp
A data visualization tool to display tissue expression data for Arabidopsis thaliana
ananta-theory
A symbolic and falsifiable cosmology exploring time emergence, coherence, and fractal intelligence.
stats-incr-nanstdev
Compute a corrected sample standard deviation incrementally, ignoring NaN values.
gutanalysistoolbox
Analysis and characterisation of cells within the gut wall using deep learning models. The current focus is on studying enteric neurons and enteric glia.
nestedsamplers.jl
Implementations of single and multi-ellipsoid nested sampling
popglen
Bioinformatics pipeline to process whole genome resequencing data and perform genotype likelihood based population genomic analyses using ANGSD and related softwares. Flexible to datasets that combine high/low coverage and historical/fresh samples.
nf-core-rnaseqdge
example nextflow pipeline with nf-core modules: RNA-seq and differential gene expression analysis
ruvpy
Reference implementation of the Relative Utility Value metric for forecast value assessment
merge_open_hospital_data
A repository to keep track of the merging of open health facility data for the afrimapr and covidza projects
scientific_research_scraper
[Python] Scraping tool for multiple databases using api's and ChromeDriver.
mrmagpie
The package provides cellular magpie related data via the madrat framework.
sus-analysis-toolkit
A web-based analysis toolkit for the System Usability Scale providing calculation, plotting, interpretation and contextualization utility.
spark-dynamic-executor-time-prediction
Neural Network Models for Predicting Execution Time with Dynamic Executor Allocation in Apache Spark.
sparseposer
Official Code for ACM Transactions on Graphics (TOG) paper "SparsePoser: Real-time Full-body Motion Reconstruction from Sparse Data"
hmm_kunitz_domain
Hidden Markov Model-based classification and structural validation of Kunitz-type protein domains. Includes sequence alignment, model training, validation on curated datasets, and structural quality assessment using PDBeFold and RMSD/Q-score analysis. Final project for the Laboratory of Bioinformatics 1 course at the University of Bologna.
