GitHub
https://github.com/emptymalei/streamlit-multipage-template
A template for streamlit apps. Multiple pages and utilities are structured.
check_ssl_cert
A shell script (that can be used as a Nagios/Icinga plugin) to check an SSL/TLS connection.
gromacs-osc
Modifications to GROMACS 2021.5 to perform MD simulations in the presence of Ultrasounds
complex-contagion-model
Repository used for my Master Thesis at Potsdam Institute for Climate Impact Research, 2024/25.
https://github.com/emptymalei/torchdyn
A PyTorch library entirely dedicated to neural differential equations, implicit models and related numerical methods
mlpro-test-center
MLPro Test Center – Howtos and benchmarking tools for MLPro components and algorithms
mosquitosimcity_4cast
Code associated with the journal article "Mechanistic Modeling of Aedes aegypti Mosquito Habitats for Climate-informed Dengue Forecasting—Can We Improve Lead Time While Retaining Predictive Skill?"
ecophysiology-of-two-mesophotic-octocorals-code-and-data
Publicly available code utilized in analyses for manuscript 'Ecophysiology of two mesophotic octocorals intended for restoration: Effects of light and temperature' (Lange et al, in review)
network_modeling
This project is my personal space to document learnings in complex systems. It's like a treasure chest filled with insights from online seminars and academic papers I've engaged with. 🎓
lujan_etal_2023_ua_osmose
Complete set of scripts used for the UA in NHCE OSMOSE model
gcs-shape
gcs is a Python library for creating generalized cylindrical shells (GCS).
xtant-3_coupling_data
Two-temperature model (TTM) parameters (G, Ce, K) calculated with XTANT-3
math-base-special-nanminf
Return the minimum value of two single-precision floating-point numbers, ignoring NaN.
precisecaller
A complete, scalable, easy-to-use, open-source platform for genomic variant detection in Oncology and Precision Medicine
https://github.com/compiler-campusminden/cb-vorlesung-bachelor-w25
Lecture "Compilerbau" (B.Sc.) (Winter 2025/26)
code_spc_ecog_stn_speech
Sample code for: Spike-phase coupling of subthalamic neurons to posterior opercular cortex predicts speech sound accuracy
self-supervised-learning-for-medical-image-analysis
Code for "Evaluating Self-Supervised Learning in Medical Imaging: A Benchmark for Robustness, Generalizability, and Multi-Domain Impact". BMVC, 2025.
gaunegf
Non-Equilibrium Green's Functions (NEGF) extension for the Gaussian software package using the gauopen Python interface
stats-strided-smeanli
Calculate the arithmetic mean of a single-precision floating-point strided array using a one-pass trial mean algorithm.
@stdlib/random-array-triangular
Create an array containing pseudorandom numbers drawn from a triangular distribution.
ncmanager-help
Documentation and help for the Neighborhood Council Management System.
CircSeqAlignTk
An R package for end-to-end analysis of RNA-seq data for circular genome
https://github.com/evamart/trimal-meta
Trimal metadata for development of Software Management Wizard importer.
ke-rcnn
KE-RCNN: unifying knowledge based reasoning into part-level attribute parsing (TCYB 2022)
tread
tread is an R package to extract data from Excel files generated by Tecan Infinite 200 Pro plate readers
kernscr
Kernel Machine Score Test for Pathway Analysis in the Presence of Semi-Competing Risks
ipd
R package to perform statistically valid and efficient inference with predicted data (IPD) using state-of-the-art methods.
prepost
R package for analyzing interactions in survey experiments with priming or post-treatment bias
rbahadur
Efficient simulation of genotype / phenotype data under assortative mating using the Bahadur order-2 multivariate Bernoulli distribution
spatpomp
R package for statistical inference of spatiotemporal partially observed Markov processes
