GitHub
math-base-special-sinf
Compute the sine of a single-precision floating-point number (in radians).
https://github.com/bblodfon/pdac-efs-bench2024
Feature Selection benchmark and analysis on multi-omics PDAC datasets
https://github.com/benny0323/deep-learning-based-mia-tasks
⭐[A Deep Survey] Paper List For Metal Artifact Reduction including traditional and deepl leanring based methods. ℱℯℯ𝓁 𝒻𝓇ℯℯ to contribute!
https://github.com/berenslab/llm-excess-vocab
Delving into LLM-assisted writing in biomedical publications through excess vocabulary
https://github.com/gssi/tinkerforge.acceleo.generator
Tinkerforge Acceleo Code Generator
https://github.com/bin-cao/shapev
[JMI 2022 | Aggregate 2025] A package for searching equivalent values based on joined SHAP values
https://github.com/bio-rsg/oceancolour
Package of custom functions for remote sensing data analysis
https://github.com/bioconductor/bioconductor-training
Bioconductor teaching and education committee
SOFIA: A Python Library for High-Quality 2D Triangular Mesh Adaptation
SOFIA: A Python Library for High-Quality 2D Triangular Mesh Adaptation - Published in JOSS (2026)
https://github.com/biodataanalysisgroup/virtual-tutorial-perturbation-modelling
https://github.com/bioinfomachinelearning/multicom4
The MULTICOM4 protein structure prediction system developed by the Bioinformatics and Machine Learning Lab at the University of Missouri - Columbia
https://github.com/biolink/resource-ingest-guide-schema
A LinkML schema for describing the scope, rationale, and modeling approach for ingesting content from a single source.
quantum-optical-network
A quantum optical setup to classify states using multiple hidden neurons.
https://github.com/bioscan-ml/barcodebert
A pre-trained representation from a transformers model for inference on insect DNA barcoding data.
https://github.com/bodenmillergroup/imcdataanalysis
R based workflow for multiplexed imaging data
https://github.com/boothgroup/vayesta
A Python package for wave function-based quantum embedding
https://github.com/bootphon/speech-map
Mean Average Precision over words or n-grams with speech features
https://github.com/bozenne/article-netbenefit-correction
Code and software for the article "Correcting the bias of the net benefit estimator due to right-censored observations" published in biometrical (link: https://doi.org/10.1002/bimj.202000001 ).
https://github.com/brainets/hosi_infogain
Script for "Higher-order and distributed synergistic functional interactions encode information gain in goal-directed learning"
https://github.com/brainglobe/brainglobe-template-builder
Build unbiased anatomical templates from individual images
desirna
State of the art software for RNA sequence design. The first to solve the Eterna benchmark!
https://github.com/broadinstitute/profiling-resistance-mechanisms
Predicting pharmacodynamic responses to cancer drugs using cell morphology
https://github.com/broadinstitute/pbs-analysis
Scripts for analyzing ChIP-seq and related datatypes with binning and PBS
quantms
Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.
drl-nav
Deep Reinforcement Learning based autonomous navigation in realistic simulation environments.
nook-iin
Programa de Tesis, determina celdas primitivas para heteroestructuras 2D multicapa
pye-plus
Multi-Criteria Decision Making (MCDM) Framework for Building Energy Systems with Expedited Computation using Machine Learning (ML) Techniques
https://github.com/brugr9/uepluginvolumecreator
Unreal Engine Plugin: Volume Creator – Documentation
https://github.com/bueler/glacier-fe-estimate
extend the Falk technique to Stokes glacier models of surface evolution
oxo-pharo
Tic-tac-toe / noughts and crosses with minimax done in Pharo Smalltalk
https://github.com/cair/tsetlinmachine
Code and datasets for the Tsetlin Machine
https://github.com/caltechlibrary/2020-05-11-swc-online
May 2020 Software Carpentry Workshop
https://github.com/camilogarciabotero/biovossencoder.jl
A small Julia package to represent BioSequences as a Voss matrix
candela
A project developing a novel framework to enhance Large Language Model (LLM) reliability and transparency using a human-readable directive scaffold and blockchain anchoring for verifiable behaviour governance.
https://github.com/cdcgov/irma
IRMA (the Iterative Refinement Meta-Assembler) is a highly configurable and adaptive tool for virus genome assembly.
https://github.com/ceed/nekrs
Mirror of NekRS - GPU-oriented version of Nek5000. Please use the official repository, https://github.com/Nek5000/nekRS, to create issues and pull requests.
https://github.com/centre-for-humanities-computing/llm-tweet-classification
Classifying tweets with large language models with zero- and few-shot learning.
https://github.com/cgeoga/vecchia.jl
Vecchia approximations for Gaussian log-likelihoods
https://github.com/ch-earth/openfews
Open and Shareable Delft-FEWS configuration for connecting the Next Generation of Forecasting Tools
https://github.com/chakravala/staticvectors.jl
Statically sized tuple vectors for Julia
https://github.com/lynkerintel/lcsb-bootstrap-old
Bootstrap for Lynker Cloud Sandbox
https://github.com/cidgoh/nf-ncov-voc
A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 or Mpox genomes. Workflow is developed in collaboration with VIRUS-MVP (https://github.com/cidgoh/VIRUS-MVP) which can be used to visualize the mutation profiles and functional annotations.
https://github.com/gssi/astra-project
The ASTRA Scheduler Tool, a Model-Driven Engineering (MDE)-based solution for designing, validating, and optimizing task schedules in safety-critical satellite systems. The tool supports Digital Twin-based runtime adaptation through scheduling reconfiguration and telemetry-driven monitoring.
https://github.com/climate-service-center/dacstore
Acceptance analysis DACStorE
https://github.com/climatecompatiblegrowth/geo-x-data-prep
Spatial data preparation tools for GeoH2 users.
https://github.com/cmendl/rqcopt_hpc
HPC implementation of Riemannian quantum circuit optimization
https://github.com/coderefinery/testing
Automated testing - Preventing yourself and others from breaking your functioning code
https://github.com/coin-or/symphony
SYMPHONY is an open-source solver, callable library, and development framework for mixed-integer linear programs (MILPs) written in C with a number of unique features
https://github.com/comp-physics/meshfreetrixi.jl
Meshfree extension to Trixi using RBF-based numerics
https://github.com/compiler-campusminden/cpl-vorlesung-master-w25
Lecture "Concepts of Programming Languages" (M.Sc.) (Winter 2025/26)
https://github.com/computational-biology-aachen/synechocystis-photosynthesis-2024
A mathematical model of photosynthetic electron transport in Synechocystis sp. PCC 6803
https://github.com/corybrunson/ordr
manage ordinations and render biplots in a tidyverse workflow
https://github.com/cosbidev/ostransformer
Official implementation for the paper ``A Deep Learning Approach for Overall Survival Prediction in Lung Cancer with Missing Values´´
https://github.com/cosmo-pop/flowfusion
Generative modelling using diffusion models and flow-matching
Felino: Extension of an open-source phase-field framework to geomaterial fracture
Felino: Extension of an open-source phase-field framework to geomaterial fracture - Published in JOSS (2026)
https://github.com/crsu-apps/popviz
A visualisation package to show absolute effects as a proportion of people
https://github.com/gssi/company2crm
This repo contains all the migration strategies for the evolution of Company Metamodel
https://github.com/csinva/clinical-rule-development
Building and vetting clinical decision rules.
https://github.com/ctu-vras/monoforce
[IROS 2024] [ICML 2024 Workshop Differentiable Almost Everything] MonoForce: Learnable Image-conditioned Physics Engine
https://github.com/cwwhitney/urban_school_gardens
Decision model on investment in urban school gardens for food environment outcomes (Hanoi, Vietnam case)
https://github.com/cyclotronresearchcentre/bidsme_containerisation
Bringing BIDSme into a container, then NeuroDesk
https://github.com/danielathome19/engram-neural-network
tensorflow-engram: A Python package for Engram Neural Networks, adding biologically-inspired Hebbian memory and engram layers to TensorFlow/Keras models, supporting memory traces, plasticity, attention, and sparsity for neural sequence learning.