GitHub
Tesseract Core
Tesseract Core: Universal, autodiff-native software components for Simulation Intelligence - Published in JOSS (2025)
citation-network-app
An interactive web app that fetches the top 20 related papers from Google Scholar (via SerpAPI), builds a citation graph, and renders it in pages of 10 nodes each.
DVMDOSTEM v0.8.3
DVMDOSTEM v0.8.3: a terrestrial ecosystem model designed to represent arctic, boreal and permafrost ecosystem dynamics - Published in JOSS (2025)
clowder
A data management system that allows users to share, annotate, organize and analyze large collections of datasets. It provides support for extensible metadata annotation using JSON-LD and a distribute analytics event bus for automatic curation of uploaded data.
ustat-var
Python package for computing unbiased variances and sampling variances of teacher means.
GBNet
GBNet: Gradient Boosting packages integrated into PyTorch - Published in JOSS (2025)
cuisto
cuisto: A Python package to quantify neurohistological data from QuPath and ABBA - Published in JOSS (2025)
AirFogSim
AirFogSim: A Python Package for Benchmarking Collaborative Intelligence in Low-Altitude Vehicular Fog Computing - Published in JOSS (2025)
SwiftPol
SwiftPol: A Python package for building and parameterizing in silico polymer systems - Published in JOSS (2025)
CompressedBeliefMDPs.jl
CompressedBeliefMDPs.jl: A Julia Package for Solving Large POMDPs with Belief Compression - Published in JOSS (2025)
prob-conf-mat
Confusion matrices with uncertainty quantification, experiment aggregation and significance testing.
unity-sparse-peripheral-display
This Unity project aims to expand the field of view (FoV) in virtual reality using strategically placed LEDs within a VR headset.
persian-summarization
Statistical and Semantical Text Summarizer in Persian Language
theses
Resources for Bachelor's and Master's theses at the Digital Work Lab (Otto-Friedrich Universität Bamberg)
cocoa-diseases
Cocoa Diseases (YOLOv4): Monilia & Phytophthora (Diseases in cocoa pods)
nfmicrofinder
This pipeline aids the curation of bird genome assemblies by identifying putative microchromosome scaffolds and moving them to the start of the genome assembly FASTA file.
Causality-in-Trustworthy-Machine-Learning
The repository contains lists of papers on causality and how relevant techniques are being used to further enhance deep learning era computer vision solutions.
horizon-dataset
The open-sourced event forecasting dataset used to evaluate Horizon and similar systems.
https://github.com/diging/virtual-spaces-docker
Docker container and docker compose for Virtual Spaces 2.0
thereminq-bonsai
ThereminQ - Bonsai QuantOPS : create, edit and deploy Bonsai visualisations in an interactive 3D desktop environment
https://github.com/giorginolab/biozernike
Protein structure descriptors and alignment based on 3D Zernike moments.
https://github.com/giorginolab/polychrom
Polymer simulations of chromosomes and generating "in silico" Hi-C maps
quantum-cryptography
Experimental data and code from the semester 5 laboratory
https://github.com/giorginolab/evobind
In silico directed evolution of peptide binders with AlphaFold
https://github.com/giorginolab/vmd_rmsdttnc
RMSD trajectory tool enhanced with native contacts
ni-chaos
Data and Matlab code to reproduce "Noise-induced chaos: A conditioned random dynamics perspective"
model-selection-sim-study
Simulation study of various variable selection techniques. Intended to examine the bias in parameter estimation in the context of causal health. In particular, we grapple with confounding, unseen confounding and bias amplification.
gs-svocc
Fit single visit occupancy models to data from camera trap and walking transects in the Gran Sabana, Venezuela
df-dn-paper
Conceptual & empirical comparisons between decision forests & deep networks
https://github.com/diging/spring-examples
A project to demonstrate simple workflows, etc.
empire-analysis
A sustainable literature review for analyzing the state and evolution of empirical research in requirements engineering using KG-EmpiRE.
https://github.com/diging/webapp-tomcat8-spring-security-archetype
A Maven archetype to create a Spring Security/MVC project for Tomcat 8
cmac
A core C++ implementation of the Cerebellar Model Articulation Controller (CMAC) with APIs in various languages. This artificial neural network is designed to be used in control system applications.