GitHub
.github
Collection of default community health files, GitHub Action workflows, templates
devonthink-hacks
Scripts and other things for working with DEVONthink, a personal information management system.
https://github.com/bionf/fas
FAS - Tool for Feature Architecture Similarity calculation
http_downloader
PelemayBackend: A memory-saving, fault-tolerant and distributed collection of Nx compilers and backends for embedded systems.
mtscomp
Multichannel time series lossless compression in pure Python based on NumPy and zlib
librapid
A highly optimised C++ library for mathematical applications and neural networks.
castep-dispersion
CASTEP post processing for plotting bandstructures and phonon dispersions
latex-credits
A package for generating CRediT (Contributor Role Taxonomy) statements
sophon.jl
Efficient, Accurate, and Streamlined Training of Physics-Informed Neural Networks
py-alpaca-eval
An automatic evaluator for instruction-following language models. Human-validated, high-quality, cheap, and fast.
genomeskim
QC and filtering of genome skims, followed by organelle assembly and/or genome analysis
proteinn-structure-predictor
A transformer network trained to predict end-to-end single sequence protein structure as a set of angles given amino acid sequences.
acoustipy
Acoustic design exploration and material property identification for porous structures
gnss_rr
Continuous estimation of snow/firn accumulation, surface mass, and density on a moving surface using combined GNSS reflectometry/refractometry (GNSS-RR)}
planet
For inferring ancestry, gestational age, cell type proportions, and preeclampsia status from placental DNA methylation array data
https://github.com/pyro-ppl/numpyro
Probabilistic programming with NumPy powered by JAX for autograd and JIT compilation to GPU/TPU/CPU.
scikit-surgerycalibration
scikit-surgery-calibration provides algorithms designed for the calibration of surgical instruments
tstoolbox
Command line script and Python library to work with time-series data.
naplib-python
Tools and functions for neural data processing and analysis in python
sharp
R package sharp (Stability-enHanced Approaches using Resampling Procedures).
epicosm
Epidemiological Cohort Social Media: social media data linkage for birth cohorts
carpenter_workshop
Brian's python workshop, where he keeps his tools, paint, and anything else useful.
https://github.com/uf3/uf3
UF3: a python library for generating ultra-fast interatomic potentials
slm-code-generation
TensorFlow code for the neural network presented in the paper: "Structural Language Models of Code" (ICML'2020)
ChaProEV
This repository contains the ChaProEV (Charging Profiles of Electric Vehicles) model.
opendssdirect.py
OpenDSSDirect.py: a cross-platform Python package that implements a native/direct library interface to the alternative OpenDSS engine from DSS-Extensions.org
https://github.com/andrewtavis/poli-sci-kit
Political elections, appointment, analysis and visualization in Python
polarityjam
The feature extraction pipeline lets you extract relevant features from your image(s) and collect them in a csv file.
nibabies
fMRIPrep Lifespan - A robust, transparent workflow tailored for neonate and infant MRI
nanocount
EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
Grassmann
⟨Grassmann-Clifford-Hodge⟩ multilinear differential geometric algebra
hgvs
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
rl-llm-calibration-test
Attempt at replication of the parts of the paper "Language models (mostly) know what they know", on open datasets, and models.
metaextractor
A repository for the UBC MDS Capstone team to develop a metadata extractor for Neotoma
https://github.com/critical-infrastructure-systems-lab/vicres
VIC-Res: Representation of water reservoir storage and operations in the Variable Infiltration Capacity (VIC) model
dicter
Python package with advanced dictionary functions. Traverse through nested dicts. Set and get multiple keys. Flattens dicts. Store and load in json and more!
belay
Belay is a python library that enables the rapid development of projects that interact with hardware via a micropython-compatible board.
DECAES
DEcomposition and Component Analysis of Exponential Signals (DECAES) - a Julia implementation of the UBC Myelin Water Imaging (MWI) toolbox for computing voxelwise T2-distributions of multi spin-echo MRI images.
TREG
Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data
landsat-ml-cookbook
Machine learning on Landsat satellite data using open source tools
https://github.com/judftteam/aiida-fleur
AiiDA plugin of the high-performance density functional theory code FLEUR (www.judft.de) for high-throughput electronic structure calculations.
https://github.com/ant-research/easytemporalpointprocess
EasyTPP: Towards Open Benchmarking Temporal Point Processes
datools
A set of Data assimilation tools. Filter smoothers, ensemble and variational methods, localization, etc.
2018-11-19-manchester
SWC workshop for Clinical Genomics @Manchester, 19-20 November 2018
https://github.com/google-research/timesfm
TimesFM (Time Series Foundation Model) is a pretrained time-series foundation model developed by Google Research for time-series forecasting.
low-voltage-loadforecasting.github.io
This is the repository for the Github pages site produced with Jekyll to our page hosting an overview of load forecasting data sets as presented in our preprint on arXiv.
PointNeighbors
PointNeighbors.jl: Neighborhood search with fixed search radius in Julia
rtk-gnss_refractometry_swe
Snow water equivalent estimation based on RTK-GNSS refractometry up-component bias, using Emlid Reach M2 .ENU baseline files
des_sharing_lit_review
Systematic scoping review paper for healthcare DES model sharing.
seasonalclumped
Toolbox for seasonal temperature reconstructions using clumped isotope analyses
paper_surname_year_journal_short-paper-name
Example repo for code and LaTeX source for a scientific paper published in the Artificial Mechanical Intelligence research line at Italian Institute of Technology.
your-code-is-0000
Your Code is 0000: An Analysis of the Disposable Phone Numbers Ecosystem
transcluster
A Snakemake workflow to find SARS-CoV-2 clusters in a reference phylogeny and estimate their normalized clustering index
tap_llm_course
Materials for the TAP (Tendencias en Aprendizaje Pronfundo) subject from the Master in Robotics and Artificial Intelligence from the Universidad de León
