GitHub
modified_llm_eval_harness
cloned from LLM eval harness, I added some datasets (MultiJail and XSTest) for my bachelor's thesis.
sphere-space-station-earth-one-and-beyond
Sphere Space Station Earth ONE and Beyond
quick-start-creating-a-vector-database-for-rag
A playground for vector database exploration using Chroma
2020-11-06-tudelft
Webpage for hypothetical Software Carpentries workshop at TU Delft
in-silico-protocols-4ml
Semantically enriched in-silico protocols for ML experiments to improve FAIRness, transparency and reproducibility
amplicon-nf
Amplicon genome assembly for ARTIC style primer schemes using Nextflow.
variantbenchmarking
Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
panoramaseq
a pipeline to process sequencing based spatial transccriptomics data from in-situ arrays
psat
PSAT: Pediatric Segmentation Approaches via Adult Augmentations and Transfer Learning
champsim
ChampSim is an open-source trace based simulator maintained at Texas A&M University and through the support of the computer architecture community.
awg-app
A web application for the online edition of the Anton Webern Gesamtausgabe
pucminas-aeds2-assignments
Content developed throughout the Data Structures and Algorithms II course in the second semester of the Computer Science program at PUC Minas, including exercises, activities, and other implementations.
https://github.com/edoardocostantini/paper-template
My Rnw template for scientific papers
uncutgem
A prototype Full Stack fully Open Source NV Center Diamond Magnetometer
ngclearn
NGC-Learn: Neurobiological Systems Design and Simulation in Python
BestApproximation
Very small Julia package to find the best exponential approximation of a given number
listofethicalgooglesearchdorks
A curated list of ethical and safe google search dorks to improve productivity.
stockout-predictor-lightgbm
A lightweight and scalable machine learning pipeline using LightGBM to predict stock-out dates for retail inventory, built with structured time-series features.
dashboard
MOMSI Standard Landscape Review Curation Workflow & Multi-Omics Dashboard
qiskit-addon-sqd
Sample-based Quantum Diagonalization: Classically postprocess noisy quantum samples to yield more accurate eigenvalue estimations.
rtron
r:trån is a road space model transformer library for OpenDRIVE, CityGML and beyond
https://github.com/edoardocostantini/ggmice
Visualize incomplete and imputed data with the R package `ggmice`
practical-ml-with-pytorch
Training material on writing machine learning code with PyTorch by ICCS
deeprank-gnn-esm
Graph Network for protein-protein interface including language model features
pyqasm
Python toolkit providing OpenQASM 3 semantic analyzer and utilities for program analysis and compilation.
rapl_measurement_workflows
Resources to implement RAPL energy measurement for Nextflow workflows on a compute cluster managed by Kubernetes
createtaxdb
Parallelised and automated construction of metagenomic classifier databases of different tools
verina
Verina (Verifiable Code Generation Arena) is a high-quality benchmark enabling a comprehensive and modular evaluation of code, specification, and proof generation as well as their compositions.
cardo-handbook
The CaRDO Handbook is designed to make CaRDO accessible to those with little or no R experience. Detailed instructions and methods are provided to enable users to create their own CaRDO interactive dashboard
sec-certs
Tool for analysis of security certificates and their security targets (Common Criteria, NIST FIPS140-2...).
photoperiodlocaladaptation
Scripts for Wang et al. (2017) "A major locus controls local adaptation and adaptive life history variation in a perennial plant". https://www.biorxiv.org/content/early/2017/12/13/178921 https://zenodo.org/badge/100579273.svg
aspenpopulationgenomics
Scripts for Wang et al. (2016) "Natural Selection and Recombination Rate Variation Shape Nucleotide Polymorphism Across the Genomes of Three Related Populus Species" Genetics 202, 1185-1200. http://doi.org/10.1534/genetics.115.183152
stableexpression
Pipeline dedicated to finding the most stable genes among a single or multiple expression dataset(s). It is useful in particular for finding the most suitable RT-qPCR reference genes for a specific species.
simpleoctree
An adaptive 2:1 balanced tree for point distributions in 2D and 3D. Written in Python with minimal dependencies.
