GitHub
https://github.com/imperialcollegelondon/gsvgd
Code for "Grassmann Stein Variational Gradient Descent" (AISTATS 2022)
https://github.com/lcsrodriguez/optimalhft
HFT & Stochastic control numerical implementations from "Optimal high frequency trading with limit and market orders" (GUILBAUD & PHAM)
https://github.com/erictleung/rosalind
:traffic_light: Programming Solutions to Bioinformatic Rosalind Problems
https://github.com/erictleung/ml-portfolio
:book: Experiment with various machine learning algorithms on various data sets from the University of California, Irvine (UCI) Machine Learning Repository (http://archive.ics.uci.edu/ml/index.html)
https://github.com/erictleung/gene-fusion-analysis
:stars: Parsing and basic network analysis of fusion genes from the Catalogue of Somatic Mutations in Cancer (COSMIC) database
https://github.com/dimits-ts/disruptive-science-study
Predicting the impact of scientific papers using traditional machine learning models and NLP
https://github.com/dedupeio/simplecosine
:triangular_ruler: simple cosine distance
https://github.com/fgnt/upb_audio_tagging_2019
UPB system for the Kaggle competition "Freesound Audio Tagging 2019"
https://github.com/fgnt/asnsig
ASNSIG – A Signal Generator for Ad-Hoc Acoustic Sensor Networks in Smart Home Environments
https://github.com/fermi-ad/acsys-cli
Command line utility to access Fermilab accelerator data.
https://github.com/fernandezfran/cluster-connections
A clustering algorithm that classifies second nearest neighbor atom pairs based on the number of interconnecting first neighbors.
https://github.com/hayekr/1d_pot_tmm
A tool to calculate the lowest energy solution and plot the wave function for a multi-level constant potential using 1D Schro. TMM
https://github.com/fernando-aristizabal/pygeoogc
A part of HyRiver software stack for accessing ArcGIS RESTful-, WFS-, and WMS-based web services.
https://github.com/fernando-aristizabal/inundation-mapping
Flood inundation mapping and evaluation software configured to work with U.S. National Water Model.
https://github.com/fernando-aristizabal/hyriver-examples
Example Notebooks for HyRiver software stack
https://github.com/jcallinan/applepicker2024
Example of ApplePicker from Jeremy Gibson Bond's Book on Video Game Programming
https://github.com/jcallinan/oopstackexample2024
An example of OOP and data structures using Node.js and MongoDB with a React front-end.
https://github.com/jcallinan/oopstackexample
Stack example using MongoDB, Node.js and React.
https://github.com/jcbayley/antikythera_holecount
count the number of holes in the scans of the antikythera mechanism
https://github.com/hazboun6/pulsar_timing_school
Learning material for pulsar timing data analysis
niarules
Numerical Association Rule Mining using Population-Based Nature-Inspired Algorithms
https://github.com/hazboun6/pta_forecasts
Various codes used to forecast the sensitivities of PTAs.
https://github.com/fernphy/ferncal
A database of fossils for molecular dating of the fern tree of life
https://github.com/hazboun6/mdc2
A repository of the IPTA Mock Data Challenge datasets.
https://github.com/fernphy/ftol_ms
Code to generate the manuscript "An open and continuously updated fern tree of life (FTOL)"
https://github.com/feroz1gul/ned-project
streamlit, FastAPI, Kafka, Kong, Containers with Docker file and compose file
https://github.com/ferreiraas/ciencia-com-r-consultoria
Ciência com R é direcionado a pesquisadores e alunos de todos os níveis de graduação e pós-graduação da Área de Saúde.
opensoundscape
Open source, scalable software for the analysis of bioacoustic recordings
https://github.com/hazboun6/enterprise
ENTERPRISE (Enhanced Numerical Toolbox Enabling a Robust PulsaR Inference SuitE) is a pulsar timing analysis code, aimed at noise analysis, gravitational-wave searches, and timing model analysis.
PSD: Parallel Finite Element Solver for Continuum Dynamics
PSD: Parallel Finite Element Solver for Continuum Dynamics - Published in JOSS (2026)
pyhctsa: A Python package for highly comparative time-series analysis
pyhctsa: A Python package for highly comparative time-series analysis - Published in JOSS (2026)
https://github.com/ferrite-fem/ferriteinterfaceelements.jl
Interface elements (aka cohesive elements) for Ferrite.jl
https://github.com/fertiglab/spatial_venous_invasion_pdac
Spatial profiling of venous invasion in human pancreatic ductal adenocarcinoma
https://github.com/fertiglab/cogaps
Bayesian MCMC matrix factorization algorithm
https://github.com/hbclab/restingstate
Scripts to preprocess resting state data and extract ROI-ROI correlations and voxel-wise ROI seedmaps
https://github.com/fertiglab/j1798_trial_paper
scripts for the J1798 trial paper
https://github.com/hbclab/jumpstartlearning
Various Resources if you want to learn/work on various projects in the Lab
https://github.com/fertiglab/bayestme
BayesTME: A reference-free Bayesian method for analyzing spatial transcriptomics data
https://github.com/hbclab/projectacuteexercise-cognitivecontrol
Data and related summaries and analyses from acute exercise project comparing effects on two cognitive control tasks.
https://github.com/hbclab/repositorylearning
Example repository towards learning/working with git
https://github.com/hwunrow/bayesian-cyclegan
[TNNLS] Bayesian Cycle-Consistent Generative Adversarial Networks via Marginalizing Latent Sampling
https://github.com/fertiglab/mkras-vax
scRNA and TCR analysis, including T-cell expansion assays, from subjects in J1994 manuscript by Huff et al.
https://github.com/hbclab/softwareissues
Issues when running primarily fmriprep/mriqc/xcpengine (primarily on argon)
https://github.com/fertiglab/pdac_atlas
Analysis workflow for all data present in our PDAC Atlas Manuscript titled, "Transfer learning associates CAFs with EMT and inflammation in tumor cells in human tumors and organoid co-culture in pancreatic ductal adenocarcinoma"
https://github.com/hbclab/renameoldfmriprep
rename the old fmriprep (< v1.2.0) files
https://github.com/jcallinan/the-algorithm-ml
Source code for Twitter's Recommendation Algorithm
https://github.com/hbclab/pysurfer
Cortical neuroimaging visualization in Python
https://github.com/hbclab/atlascorr
basic correlations of fMRI data using an atlas
https://github.com/hbclab/miykael.github.io
Repo for my personal page: https://miykael.github.io/
https://github.com/hbclab/eprimedockerfile
Dockerfile to create the environment to run the eprime conversion code in the task repositories
https://github.com/924973292/awesome-aerial-ground-object-re-identification
Awesome-AGReID is a curated collection of the latest methods, datasets, and benchmarks for Aerial–Ground Object Re-Identification (AG-ReID). This field focuses on matching objects, mainly people and vehicles, between aerial drone views and ground cameras—an important task for surveillance and security applications.
https://github.com/hbclab/networkneuroscience
Repository for scripts to run network analyses on neuroimaging data
