ez-zarr — Peer-reviewed • Science 98%

ez-zarr: A Python package for easy access and visualisation of OME-Zarr filesets - Published in JOSS (2025)

pooledpeaks — Peer-reviewed • Science 93%

pooledpeaks: Open-Source Fragment Scoring and Analysis Workflow for Population Genetic Analyses of Microsatellite Markers in Pooled Samples - Published in JOSS (2025)

ParquetDB — Peer-reviewed • Science 93%

ParquetDB: A Lightweight Python Parquet-Based Database - Published in JOSS (2025)

AutoEIS — Peer-reviewed • Science 98%

AutoEIS: Automated equivalent circuit modeling from electrochemical impedance spectroscopy data using statistical machine learning - Published in JOSS (2025)

PathSim - A System Simulation Framework — Peer-reviewed • Science 98%

PathSim - A System Simulation Framework - Published in JOSS (2025)

BESMARTS — Peer-reviewed • Science 93%

BESMARTS: A toolkit for data-driven force field design using binary-encoded SMARTS - Published in JOSS (2025)

EXP — Peer-reviewed • Science 98%

EXP: a Python/C++ package for basis function expansion methods in galactic dynamics - Published in JOSS (2025)

Minterpy — Peer-reviewed • Science 93%

Minterpy: multivariate polynomial interpolation in Python - Published in JOSS (2025)

Topography-based surface water modeling in Julia, with support for infiltration and temporal developments — Peer-reviewed • Science 67%

Topography-based surface water modeling in Julia, with support for infiltration and temporal developments - Published in JOSS (2025)

DIFFICE-jax — Peer-reviewed • Science 93%

DIFFICE-jax: Differentiable neural-network solver for data assimilation of ice shelves in JAX - Published in JOSS (2025)

pengWann — Peer-reviewed • Science 98%

pengWann: Descriptors of chemical bonding from Wannier functions - Published in JOSS (2025)

Pydre — Peer-reviewed • Science 100%

Pydre: A Python package for driving simulation data reduction - Published in JOSS (2025)

OPTIMUS — Peer-reviewed • Science 93%

OPTIMUS: A Multidimensional Global Optimization Package - Published in JOSS (2025)

ReadmeReady — Peer-reviewed • Science 93%

ReadmeReady: Free and Customizable Code Documentation with LLMs - A Fine-Tuning Approach - Published in JOSS (2025)

ml-template • Science 44%

Collections of code snippets for and beyond machine learning

rjaf — Peer-reviewed • Science 95%

rjaf: Regularized Joint Assignment Forest with Treatment Arm Clustering - Published in JOSS (2025)

sparsematrixcolorings.jl • Science 67%

Coloring algorithms for sparse Jacobian and Hessian matrices

terraform-provider-iactools • Science 44%

LederWorks IaC Tools terraform provider

LongMemory.jl — Peer-reviewed • Science 100%

LongMemory.jl: Generating, Estimating, and Forecasting Long Memory Models in Julia - Published in JOSS (2025)

wneq • Science 67%

wneq is a Python package for computing nuclear equilibria in nucleosynthesis.

daedalus • Science 52%

[UNDER DEVELOPMENT] R package implementing the DAEDALUS model for projecting and optimising health, social, and economic costs of a pandemic.

QuantumACES.jl — Peer-reviewed • Science 98%

QuantumACES.jl: design noise characterisation experiments for quantum computers - Published in JOSS (2025)

stars-reproduce-johnson-2021 • Science 77%

Assessing the computational reproducibility of Johnson et al. 2021 as part of STARS.

maxwel_cookie • Science 44%

@stdlib/ndarray-base-shape • Science 44%

Return the shape of a provided ndarray.

DemeterWatch — Peer-reviewed • Science 95%

DemeterWatch: A Java tool to detect Law of Demeter violations in Java collections - Published in JOSS (2025)

sixarm_ruby_sentry • Science 44%

SixArm.com » Ruby » Sentry simple monitorning of URI links, DNS names, etc.

ai-attendance-system • Science 44%

An AI-powered attendance system using YOLOv5 for face detection and recognition.

awesome-arm-in-smart-agriculture • Science 67%

A collection of literature on the use of association rule mining methods in smart agriculture

mlflow-cnn • Science 54%

Galaxy Redshift Estimation Using Convolutional Neural Networks with MLflow Tracking

VSMOD: A Vessel Segmentation and MODelization plugin for 3D Slicer • Science 93%

VSMOD: A Vessel Segmentation and MODelization plugin for 3D Slicer - Published in JOSS (2025)

cvat_submission • Science 54%

mcity_data_engine • Science 52%

Mcity Data Engine

COHESIVM — Peer-reviewed • Science 98%

COHESIVM: Combinatorial h+/e- Sample Investigation using Voltaic Measurements - Published in JOSS (2025)

irma-core • Science 57%

A tool to aid virus sequencing and accelerate IRMA.

autqec_ant_mods • Science 54%

forgeffects • Science 44%

ScatteringOptics.jl — Peer-reviewed • Science 95%

ScatteringOptics.jl: An Interstellar Scattering Framework in the Julia Programming Language - Published in JOSS (2025)

fair_genome_indexer • Science 44%

Download and index Ensembl sequences and annotations, remove non-canonical chromosimes, remove low TSL, index with multiple tools

https://github.com/bienflorencia/rda-sharc-reco • Science 49%

caldp • Science 52%

The DMS environment for HST calibration software

yaml • Science 54%

Qompass AI on YAML

sslip • Science 57%

Slip System based Identification of Local Plasticity

macchiato • Science 57%

Macchiato is a Petri Nets implementation for Python 3 with a focus of usability and scriptability.

interface_serial_link • Science 44%

Definitions for custom messages, services, and actions in ROS2.

edu.sc.seis • Science 67%

Flexible Seismic Travel-Time and Raypath Utilities

evexplorer • Science 57%

nf-core/evexplorer is a pipeline for analyzing RNA data from extracellular vesicles, compatible with technologies such as nextflex, comboSeq, and ONT with further support forthcoming. evexplorer handles QC, expressed region detection, library size normalization and Differential RNA Expression (DRE)

mumu • Science 44%

C++ implementation of lulu, a R package for post-clustering curation of metabarcoding data

microneuseg • Science 49%

PeakPerformance - A tool for Bayesian inference-based fitting of LC-MS/MS peaks — Peer-reviewed • Science 96%

PeakPerformance - A tool for Bayesian inference-based fitting of LC-MS/MS peaks - Published in JOSS (2024)

mzs-tools • Science 67%

QGIS plugin for Italian Seismic Microzonation

dataportal • Science 44%

Serverless data portal

stochasticvehiclescheduling.jl • Science 54%

Application of InferOpt.jl to the Stochastic Vehicle Scheduling Problem

mmdetection-baseline • Science 44%

mmdetection-baseline for myself

intro-tableau • Science 54%

An introductory lesson on data visualization using Tableau Public. Learners create charts, explore datasets, and build dashboards—no prior experience required.

ultralystics-baseline • Science 44%

Based on the official Ultralytics repository, I've added some of my own tricks to serve as a baseline for various comparative experiments in object detection.

analise_psicometrica_sqr20 • Science 57%

project-management • Science 44%

@stdlib/ndarray-broadcast-arrays • Science 44%

Broadcast ndarrays to a common shape.

lambdanative-and-fdroid • Science 44%

Introduction to building and distributing Android applications

2025-05-13_greenhpc_edinburgh • Science 52%

https://github.com/erictleung/coursework • Science 10%

:notebook: Coursework for miscellaneous programming, web development, etc courses

dummydatarepo • Science 67%

ramanspy • Science 67%

dwhiteplume.github.io • Science 44%

Basic info about me.

tutorial-developing-benchmarks • Science 44%

Tutorial on developing benchmarks

creative-animation-in-the-theater • Science 44%

fuzzy-logic-toolkit • Science 44%

A mostly MATLAB-compatible fuzzy logic toolkit for Octave.

2025-05-01-otago-data-org • Science 44%

https://github.com/erictleung/freecodecamp-news-analysis • Science 10%

:office: Code and notes on running various database management systems

portal-admin • Science 44%

Sistema de gerenciamento de orçamentos, solicitações de serviços, fornecedores e clientes.

task-assignment-robotic-warehouse • Science 44%

Multiagent RL Open Project

quantflow • Science 44%

Quantitative finance and derivative pricing

spectacoular • Science 44%

Extension module for Acoular for the realization of microphone array GUI applications with minimal programming effort.

pid4cat-model • Science 49%

Handle-based PIDs with a rich LinkML metadata model for resources in catalysis (PID4Cat)

creepyhdr • Science 44%

Repository for new guide site

Biosensor Framework — Peer-reviewed • Science 100%

Biosensor Framework: A C# Library for Affective Computing - Published in JOSS (2021)

hydropower-fatigue-damage-reduction • Science 44%

Code for EPFL PTMH & SDSC's paired-hydro project

haploidsprucemap • Science 44%

Scripts and data input files for Norway spruce genetic maps from haploid megagametophyte data. Maps and results are presented in Bernhardsson et al. (2018). "An ultra-dense haploid genetic map for evaluating the highly fragmented genome assembly of Norway spruce (Picea abies) "

montejo-kovacevich-lab-website • Science 44%

Source code for montejo-kovacevich-lab website

diffilqrax • Science 67%

Diffilqrax is an open-source Python library for differentiable iLQR and LQR in JAX

qiskit-serverless • Science 44%

A programming model for leveraging quantum and classical resources

@stdlib/blas-base-transpose-operation-resolve-str • Science 44%

Return the transpose operation string associated with a supported BLAS transpose operation value.

tensorflow-fedrated • Science 54%

viralassembly • Science 57%

Assemble and QC viral reads with a reference scheme

archives_site_demo • Science 44%

constants-float32-eulergamma • Science 44%

The Euler-Mascheroni constant.

2016-10-10-ucb • Science 54%

translate-dir-cli • Science 57%

nextgen-ai-platform • Science 44%

llvm-snapshots • Science 44%

Everything to build LLVM snapshots for Fedora/RHEL/CentOS Stream

gsea_refiner • Science 44%

A python tool for interpreting pathway enrichment results using NLP techniques.

crocodeel • Science 67%

CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data

traffic-congestion- • Science 44%

isnad2network • Science 44%

Toolkit for Deriving Network from Isnads (Citation Pathways)

https://github.com/biaslab/ecc2025-marxefe • Science 46%

shoutout • Science 65%

Open transcription platform with scheduled audio processing

caraml • Science 75%

CARAML Benchmark Suite

stats-array-mskmin • Science 44%

Calculate the minimum value of an array according to a mask.

stats-array-minabs • Science 44%

Calculate the minimum absolute value of an array.