GitHub
https://github.com/linux-cpp-lisp/pytorch_geometric
Geometric Deep Learning Extension Library for PyTorch
https://github.com/linux-cpp-lisp/opt_einsum
⚡️Optimizing einsum functions in NumPy, Tensorflow, Dask, and more with contraction order optimization.
https://github.com/linux-cpp-lisp/litmatter
Rapid experimentation and scaling of deep learning models on molecular and crystal graphs.
pyOMA2: A Python module for conducting operational modal analysis
pyOMA2: A Python module for conducting operational modal analysis - Published in JOSS (2025)
tmmax
A fast transfer matrix method written in jax for modelling optical multilayer thin films
NonSysId: Nonlinear System Identification with Improved Model Term Selection for NARMAX Models
NonSysId: Nonlinear System Identification with Improved Model Term Selection for NARMAX Models - Published in JOSS (2025)
THz Image Explorer - An Interactive Cross-Platform Open-Source THz Image Analysis Tool
THz Image Explorer - An Interactive Cross-Platform Open-Source THz Image Analysis Tool - Published in JOSS (2025)
PyDrugLogics: A Python Package for Predicting Drug Synergies Using Boolean Models
PyDrugLogics: A Python Package for Predicting Drug Synergies Using Boolean Models - Published in JOSS (2025)
https://github.com/kull-centre/_2024_larsen-ledet_mlh1
data and scripts for "Disentangling the mutational effects on protein stability and interaction of human MLH1"
MetaSpread: A cancer growth and metastatic spread simulation program in Python
MetaSpread: A cancer growth and metastatic spread simulation program in Python - Published in JOSS (2025)
mlr3extralearners: Expanding the mlr3 Ecosystem with Community-Driven Learner Integration
mlr3extralearners: Expanding the mlr3 Ecosystem with Community-Driven Learner Integration - Published in JOSS (2025)
deepinv
DeepInverse: a PyTorch library for solving imaging inverse problems using deep learning
mlgidGUI - an annotation program for 2D scattering data
mlgidGUI - an annotation program for 2D scattering data - Published in JOSS (2025)
STON: SofTware for petrOgraphic visualisatioN
STON: SofTware for petrOgraphic visualisatioN - Published in JOSS (2025)
optimeo
OPTIMEO is a package doubled by a web application that helps you optimize your experimental process by generating a Design of Experiment, generating new experiments using Bayesian Optimization (BO), and analyzing the results of your experiments using Machine Learning models.
PathFinder: A Matlab/Octave package for oscillatory integration
PathFinder: A Matlab/Octave package for oscillatory integration - Published in JOSS (2025)
NeuroCAPs
NeuroCAPs: A Python Package for Performing Co-Activation Patterns Analyses on Resting-State and Task-Based fMRI Data - Published in JOSS (2025)
ActiSleep Tracker
ActiSleep Tracker: a Python-based dashboard for adjusting automatic sleep predictions of actigraphy data - Published in JOSS (2025)
HINA
HINA: A Learning Analytics Tool for Heterogenous Interaction Network Analysis in Python - Published in JOSS (2025)
PANKH: An unsteady potential flow solver for hovering airfoils
PANKH: An unsteady potential flow solver for hovering airfoils - Published in JOSS (2025)
elasticipy
A python toolkit to perform common tensor operations in Continuum Mechanics
https://github.com/kull-centre/prism
Software development pipelines related to the PRISM project
eitprocessing
Software for electrical impedance tomography data loading, visualization and processing
PyMetric: A Geometry Informed Array Mathematics Package
PyMetric: A Geometry Informed Array Mathematics Package - Published in JOSS (2026)
SPAC: A Python Package for Spatial Single-Cell Analysis of Multiplexed Imaging
SPAC: A Python Package for Spatial Single-Cell Analysis of Multiplexed Imaging - Published in JOSS (2026)
pyforce: Python Framework for data-driven model Order Reduction of multi-physiCs problEms
pyforce: Python Framework for data-driven model Order Reduction of multi-physiCs problEms - Published in JOSS (2026)
vkcompviz
Vulkan image and data processing framework capable of running a cascade of compute shaders and displaying or storing the result.
https://github.com/kull-centre/_2025_larsen_degron_transcriptionfactors
Scripts and output from "Comprehensive degron mapping in human transcription factors"
hermes-rheo
Python package designed to complement and extend the piblin library, offering a set of transforms tailored for analysis of rheological data
SatRbedo: An R package for retrieving snow and ice albedo from optical satellite imagery
SatRbedo: An R package for retrieving snow and ice albedo from optical satellite imagery - Published in JOSS (2026)
torch_blue: A Flexible Python Package for Bayesian Neural Networks in PyTorch
torch_blue: A Flexible Python Package for Bayesian Neural Networks in PyTorch - Published in JOSS (2026)
https://github.com/spectralmatch/spectralmatch
Relative radiometric normalization toolkit for raster mosaics and time series
FAIRmaterials: Ontology Tools with Data FAIRification in Development
FAIRmaterials: Ontology Tools with Data FAIRification in Development - Published in JOSS (2026)
$\mathcal{H}$-HIGNN Toolkit: A Software for Efficient and Scalable Simulation of Large-Scale Particulate Suspensions Using GNNs and $\mathcal{H}$-Matrices
$\mathcal{H}$-HIGNN Toolkit: A Software for Efficient and Scalable Simulation of Large-Scale Particulate Suspensions Using GNNs and $\mathcal{H}$-Matrices - Published in JOSS (2026)
https://github.com/kull-centre/colabcalvados
Jupyter Notebook on Google Colaboratory to generate and refine protein conformational ensembles from CALVADOS simulations
aiida-aimall: A Python package for automating workflows for AIMAll software
aiida-aimall: A Python package for automating workflows for AIMAll software - Published in JOSS (2026)
https://github.com/kull-centre/_2025_voutsinos_degron_cytosol
A complete map of human cytosolic degrons and characterization of their exposure and relevance for disease
https://github.com/kuleuven-cosic/eevee
The Eevee Family of AEAD modes for IoT-friendly encryption and MPC-friendly decryption
OnlinePCA.jl: A Julia Package for Out-of-core and Sparse Principal Component Analysis
OnlinePCA.jl: A Julia Package for Out-of-core and Sparse Principal Component Analysis - Published in JOSS (2026)
OnlineNMF.jl: A Julia Package for Out-of-core and Sparse Non-negative Matrix Factorization
OnlineNMF.jl: A Julia Package for Out-of-core and Sparse Non-negative Matrix Factorization - Published in JOSS (2026)
https://github.com/kull-centre/_2025_pedersen_prkn_bag6
BAG6 and RNF126 are broadly involved in protein quality control of non-native missense protein variants
Reyna: A minimal overhead polytopal discontinuous Galerkin finite element library
Reyna: A minimal overhead polytopal discontinuous Galerkin finite element library - Published in JOSS (2026)
MieSimulatorGUI: A user-friendly tool to compute and visualize light scattering by spherical dielectric particles
MieSimulatorGUI: A user-friendly tool to compute and visualize light scattering by spherical dielectric particles - Published in JOSS (2026)
Dyad: a binary-star dynamics and statistics library for Python
Dyad: a binary-star dynamics and statistics library for Python - Published in JOSS (2026)
pyfive: A pure-Python HDF5 reader
pyfive: A pure-Python HDF5 reader - Published in JOSS (2026)
BiGSTARS.jl: A Julia package for bi-global stability analysis for rotating stratified flows
BiGSTARS.jl: A Julia package for bi-global stability analysis for rotating stratified flows - Published in JOSS (2026)
hlnn-replicationpackage
The repository for the replication package of the paper "On-the-Fly Syntax Highlighting Using Neural Networks."
anvay: A Web-based Tool for Interpretive Topic Modelling in Bengali
anvay: A Web-based Tool for Interpretive Topic Modelling in Bengali - Published in JOSS (2026)
Htool-DDM: A C++ library for parallel solvers and compressed linear systems.
Htool-DDM: A C++ library for parallel solvers and compressed linear systems. - Published in JOSS (2026)
KinOpt: A Python package for chemical kinetics analysis and optimization
KinOpt: A Python package for chemical kinetics analysis and optimization - Published in JOSS (2026)
FaceMaskDetection
A Machine Learning Project , in which our model is capable to detect faces under the mask.
FluxOptics.jl: A Differentiable Wave Optics Framework for Inverse Design in Julia
FluxOptics.jl: A Differentiable Wave Optics Framework for Inverse Design in Julia - Published in JOSS (2026)
Graphorge: An open-source forge of graph neural networks
Graphorge: An open-source forge of graph neural networks - Published in JOSS (2026)
tangram, an open platform for modular, real-time air traffic management research
tangram, an open platform for modular, real-time air traffic management research - Published in JOSS (2025)
evaluation-function-api
OpenAPI Specification and Validation Schemas for the Evaluation Function API
powerfactory-tools
A Python toolbox for the (external) control of DIgSILENT PowerFactory.
times_model
The Integrated MARKAL-EFOM System (TIMES) - a bottom-up optimization model for energy-environment systems
wot-solid
A WoT- & SoLiD-based Mobile App for Wearable Data Collection and Visualization
baysc: An R package for Bayesian survey clustering
baysc: An R package for Bayesian survey clustering - Published in JOSS (2026)