GitHub
https://github.com/cldf/cldfviz
A python library providing tools to visualize data from CLDF datasets.
ladds
Large-scale Deterministic Debris Simulation - Codebase for the ARIADNA Study between TU Munich and ESA's Advanced Concepts Team.
https://github.com/ay-lab/mustache
Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation
nighthawk
Nighthawk is a machine learning model for acoustic monitoring of nocturnal bird migration.
https://github.com/arviz-devs/simuk
Simulation based calibration and generation of synthetic data.
https://github.com/cldf/cldfbench
Tooling to create CLDF datasets from existing data
odak
Scientific computing library for optics, computer graphics and visual perception.
https://github.com/bluebrain/atlas-alignment
Blue Brain multi-modal registration and alignment toolbox
egyptiancoffins
Egyptian Coffins website - Jekyll, material, bootstrap, jquery
pytorch-optimize
A simple black-box optimization framework to train your pytorch models for optimizing non-differentiable objectives
panda-gazebo
A reinforcement learning-oriented Panda Emika Franka gazebo simulation.
eprinttools
EPrintTools is a Go package, command line utilities and a service for working with EPrints 3.3.x EPrint XML and REST API
devonthink-hacks
Scripts and other things for working with DEVONthink, a personal information management system.
.github
Collection of default community health files, GitHub Action workflows, templates
https://github.com/bionf/fas
FAS - Tool for Feature Architecture Similarity calculation
http_downloader
PelemayBackend: A memory-saving, fault-tolerant and distributed collection of Nx compilers and backends for embedded systems.
mtscomp
Multichannel time series lossless compression in pure Python based on NumPy and zlib
librapid
A highly optimised C++ library for mathematical applications and neural networks.
castep-dispersion
CASTEP post processing for plotting bandstructures and phonon dispersions
latex-credits
A package for generating CRediT (Contributor Role Taxonomy) statements
sophon.jl
Efficient, Accurate, and Streamlined Training of Physics-Informed Neural Networks
py-alpaca-eval
An automatic evaluator for instruction-following language models. Human-validated, high-quality, cheap, and fast.
acoustipy
Acoustic design exploration and material property identification for porous structures
gnss_rr
Continuous estimation of snow/firn accumulation, surface mass, and density on a moving surface using combined GNSS reflectometry/refractometry (GNSS-RR)}
genomeskim
QC and filtering of genome skims, followed by organelle assembly and/or genome analysis
proteinn-structure-predictor
A transformer network trained to predict end-to-end single sequence protein structure as a set of angles given amino acid sequences.
planet
For inferring ancestry, gestational age, cell type proportions, and preeclampsia status from placental DNA methylation array data
https://github.com/pyro-ppl/numpyro
Probabilistic programming with NumPy powered by JAX for autograd and JIT compilation to GPU/TPU/CPU.
scikit-surgerycalibration
scikit-surgery-calibration provides algorithms designed for the calibration of surgical instruments
tstoolbox
Command line script and Python library to work with time-series data.
naplib-python
Tools and functions for neural data processing and analysis in python
sharp
R package sharp (Stability-enHanced Approaches using Resampling Procedures).
carpenter_workshop
Brian's python workshop, where he keeps his tools, paint, and anything else useful.
epicosm
Epidemiological Cohort Social Media: social media data linkage for birth cohorts
https://github.com/uf3/uf3
UF3: a python library for generating ultra-fast interatomic potentials
slm-code-generation
TensorFlow code for the neural network presented in the paper: "Structural Language Models of Code" (ICML'2020)
ChaProEV
This repository contains the ChaProEV (Charging Profiles of Electric Vehicles) model.
opendssdirect.py
OpenDSSDirect.py: a cross-platform Python package that implements a native/direct library interface to the alternative OpenDSS engine from DSS-Extensions.org
https://github.com/andrewtavis/poli-sci-kit
Political elections, appointment, analysis and visualization in Python
polarityjam
The feature extraction pipeline lets you extract relevant features from your image(s) and collect them in a csv file.
nibabies
fMRIPrep Lifespan - A robust, transparent workflow tailored for neonate and infant MRI
nanocount
EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
Grassmann
⟨Grassmann-Clifford-Hodge⟩ multilinear differential geometric algebra
hgvs
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`
metaextractor
A repository for the UBC MDS Capstone team to develop a metadata extractor for Neotoma
rl-llm-calibration-test
Attempt at replication of the parts of the paper "Language models (mostly) know what they know", on open datasets, and models.
https://github.com/critical-infrastructure-systems-lab/vicres
VIC-Res: Representation of water reservoir storage and operations in the Variable Infiltration Capacity (VIC) model
dicter
Python package with advanced dictionary functions. Traverse through nested dicts. Set and get multiple keys. Flattens dicts. Store and load in json and more!
belay
Belay is a python library that enables the rapid development of projects that interact with hardware via a micropython-compatible board.
DECAES
DEcomposition and Component Analysis of Exponential Signals (DECAES) - a Julia implementation of the UBC Myelin Water Imaging (MWI) toolbox for computing voxelwise T2-distributions of multi spin-echo MRI images.
TREG
Tools for finding Total RNA Expression Genes in single nucleus RNA-seq data
landsat-ml-cookbook
Machine learning on Landsat satellite data using open source tools
https://github.com/judftteam/aiida-fleur
AiiDA plugin of the high-performance density functional theory code FLEUR (www.judft.de) for high-throughput electronic structure calculations.
https://github.com/ant-research/easytemporalpointprocess
EasyTPP: Towards Open Benchmarking Temporal Point Processes
datools
A set of Data assimilation tools. Filter smoothers, ensemble and variational methods, localization, etc.
2018-11-19-manchester
SWC workshop for Clinical Genomics @Manchester, 19-20 November 2018
