GitHub
eucanscreenwp5_demo_aspire
Demo version for the 2025_02_06 meeting. The tools are shown with an example model and a simple R script.
tiapn-template
Template para a disciplina de TI: APLICAÇÕES PARA PROCESSOS DE NEGÓCIOS
clubes_de_ciencias_sdms
Material for 1 week course in species distribution modeling using R notebooks, MaxEnt, and GIS packages.
perihpx
Implementation of finite element and finite difference approximation of Nonlocal models
pmv-si-2023-2-pe5-t4-t5-grp04
pmv-si-2023-2-pe5-t4-t5-grp04 created by GitHub Classroom
bua-vivo-ontology-extensions
Extensions to VIVO ontologies describing entities in the German academic domain
mapping-pipeline
This repo will combine all the steps of mapping EHR data to the CAPACITY registry in one big docker-compose file
kms-nl
tekstboek Kwantitatieve Methoden en Statistiek (Nederlandstalige versie, NL), beschikbaar via https://hugoquene.github.io/KMS-NL/
retrieveseq
RetrieveSeq is a GUI application that performs batch download of how many gene sequences you wish from Ensembl database. Mind you: this application is still under development. Our goal is to increase its functions, as well as provide more database options.
mspconverter
A package to convert tandem mass spectra files from MSP to MGF format
https://github.com/alberto-santini/kpgf
The 0-1 Knapsack Problem with Group Fairness
https://github.com/alcrene/emdcmp
Original implementation of the EMD (empirical model discrepancy) model comparison criterion
https://github.com/alexandrovlab/sigprofilersimulator
SigProfilerSimulator allows realistic simulations of mutational patterns and mutational signatures in cancer genomes. The tool can be used to simulate signatures of single point mutations, double point mutations, and insertion/deletions. Further, the tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
https://github.com/algebraicjulia/decapodes.jl
A framework for composing and simulating multiphysics systems
https://github.com/algebraicjulia/acsets.jl
ACSets: Algebraic databases as in-memory data structures
https://github.com/aliireza/slice-aware
Slice-aware Memory Management - Exploiting NUCA Characteristic of LLC in Intel Processors
https://github.com/alleninstitute/patchseq_human_l1
supporting data and code for human L1 patchSeq manuscript
https://github.com/allfed/allfed-repository-template
Use this as a template for a new project: https://medium.com/programming-lite/repository-templates-in-github-why-how-75b1d1bd43f2
https://github.com/allfed/water-access
Global analysis of freshwater access by walking or cycling in the event of catastrophic infrastructure loss.
https://github.com/aloftdata/bird-migration-flow-visualization
Bird migration flow visualization
https://github.com/alondmnt/joplin-plugin-tag-navigator
A PKM system to organise, search, browse and convert inline tags, front matter and tasks in Joplin
https://github.com/amazon-science/job-posting-structure
Extract structured information from job postings.
https://github.com/amazon-science/wqa-multi-sentence-inference
This repository contains code used for our Multi Sentence Inference NAACL'22 paper.
https://github.com/amazon-science/recode
Releasing code for "ReCode: Robustness Evaluation of Code Generation Models"
https://github.com/amazon-science/latticealgorithms.jl
Algorithms to solve lattice problems in Julia
https://github.com/amber-md/cpptraj
Biomolecular simulation trajectory/data analysis.
pose_inference
A high-performance, multi-threaded C++ pipeline for real-time multi-camera keypoint detection.
https://github.com/macillas/rfnetpyslam
SYDE673 A3. Integrate RFNet (receptive field CNN) in PySLAMv2 for VO and SLAM
SlicerNNInteractive: A 3D Slicer extension for nnInteractive
SlicerNNInteractive: A 3D Slicer extension for nnInteractive - Published in JOSS (2026)
https://github.com/macillas/s2dnet
Reproduce S2DNet from Minimal code to load S2DNet weights (ECCV 2020)
https://github.com/macillas/monodepth2
[ICCV 2019] Monocular depth estimation from a single image
https://github.com/macillas/midas
Code for robust monocular depth estimation described in "Ranftl et. al., Towards Robust Monocular Depth Estimation: Mixing Datasets for Zero-shot Cross-dataset Transfer, TPAMI 2022"
https://github.com/macillas/dall-e
PyTorch package for the discrete VAE used for DALL·E.
https://github.com/felipenlunkes/filmplay
Um visualizador de filmes desenvolvido em Java
https://github.com/macillas/fbrs_interactive_segmentation
Fork of f-BRS to make it easier to use as a function inside your own project.
https://github.com/hauselin/awesome-rl
Reinforcement learning resources curated
https://github.com/hauselin/awesome-humane-tech
Promoting Solutions that Improve Wellbeing, Freedom and Society
https://github.com/hausergroup/psymodtraining
Training model on psychedelic drugs and their receptors
https://github.com/hausergroup/neuralfixer
NeuralFixer: State-specific protein-ligand complex structure prediction that might actually work
https://github.com/hausergroup/ouroatc
Transform UK Biobank data to Use ATC format
https://github.com/hautaniemilab/histolytics
Interpretable Analysis of Histological WSIs
https://github.com/hautaniemilab/segmentqtl
SegmentQTL is a segmentation-aware molecular quantitative trait loci (molQTL) analysis tool designed for copy number–driven cancers.
https://github.com/hautaniemilab/tumor-evolution-2023
Evolutionary states and trajectories characterized by distinct pathways stratify patients with ovarian high grade serous carcinoma (HGSC)
green-digital-skills-r
This is a demonstration of the implementation of Green Code (python) in R-based workflows to measure the energy consumption of individual snippets of code, scripts, and rendered documents (i.e., Rmd/QMD). This work is an extension to the pilot Green Digital Skills workshop by the Netherlands eScience center.
https://github.com/agathesenellart/summer_school_ai_science_2025
This repository contains the material for the tutorial session on Multimodal Variational Autoencoders for the Summer School AI+Science 2025.
stats-strided-dmediansorted
Calculate the median value of a sorted double-precision floating-point strided array.
math-array-tools-unary
Constructor for applying a unary function to each element in an input array.
ppiref
Dataset and package for working with protein-protein interactions in 3D
monofonic_sbmy
A fork from the monofoIC code (https://bitbucket.org/ohahn/monofonic.git)
singlecellmultimodal
This is a read-only mirror of the git repos at https://bioconductor.org
