GitHub
OnlinePCA.jl: A Julia Package for Out-of-core and Sparse Principal Component Analysis
OnlinePCA.jl: A Julia Package for Out-of-core and Sparse Principal Component Analysis - Published in JOSS (2026)
OnlineNMF.jl: A Julia Package for Out-of-core and Sparse Non-negative Matrix Factorization
OnlineNMF.jl: A Julia Package for Out-of-core and Sparse Non-negative Matrix Factorization - Published in JOSS (2026)
ijlookupstorm
ImageJ 1.x implementation of a 3D real-time single molecule localization microscopy algorithm based on lookup tables
Reyna: A minimal overhead polytopal discontinuous Galerkin finite element library
Reyna: A minimal overhead polytopal discontinuous Galerkin finite element library - Published in JOSS (2026)
MieSimulatorGUI: A user-friendly tool to compute and visualize light scattering by spherical dielectric particles
MieSimulatorGUI: A user-friendly tool to compute and visualize light scattering by spherical dielectric particles - Published in JOSS (2026)
Dyad: a binary-star dynamics and statistics library for Python
Dyad: a binary-star dynamics and statistics library for Python - Published in JOSS (2026)
pyfive: A pure-Python HDF5 reader
pyfive: A pure-Python HDF5 reader - Published in JOSS (2026)
BiGSTARS.jl: A Julia package for bi-global stability analysis for rotating stratified flows
BiGSTARS.jl: A Julia package for bi-global stability analysis for rotating stratified flows - Published in JOSS (2026)
template-lang-und
A template repo for new languages, as well as to update existing language repos with.
anvay: A Web-based Tool for Interpretive Topic Modelling in Bengali
anvay: A Web-based Tool for Interpretive Topic Modelling in Bengali - Published in JOSS (2026)
Htool-DDM: A C++ library for parallel solvers and compressed linear systems.
Htool-DDM: A C++ library for parallel solvers and compressed linear systems. - Published in JOSS (2026)
KinOpt: A Python package for chemical kinetics analysis and optimization
KinOpt: A Python package for chemical kinetics analysis and optimization - Published in JOSS (2026)
FluxOptics.jl: A Differentiable Wave Optics Framework for Inverse Design in Julia
FluxOptics.jl: A Differentiable Wave Optics Framework for Inverse Design in Julia - Published in JOSS (2026)
Graphorge: An open-source forge of graph neural networks
Graphorge: An open-source forge of graph neural networks - Published in JOSS (2026)
tangram, an open platform for modular, real-time air traffic management research
tangram, an open platform for modular, real-time air traffic management research - Published in JOSS (2025)
powerfactory-tools
A Python toolbox for the (external) control of DIgSILENT PowerFactory.
artefact_insertion
This package inserts artefacts that are commonly present in in dermatoscopic images into other images.
xr_fresh: Automated Time Series Feature Extraction for Remote Sensing & Gridded Data
xr_fresh: Automated Time Series Feature Extraction for Remote Sensing & Gridded Data - Published in JOSS (2025)
lightweb
Light Web combines keyboard and mouse clicks into "actions". Actions are dynamic ways to interact with websites without searching
SpectralUnmixing
Spectral unmixing, oriented towards imaging spectroscopy data. Lots of flavors included.
MujocoROS2Control: Seamless MuJoCo Integration with ROS 2 for Robot Simulation and Control
MujocoROS2Control: Seamless MuJoCo Integration with ROS 2 for Robot Simulation and Control - Published in JOSS (2025)
MatrixBandwidth
Fast algorithms for matrix bandwidth minimization and matrix bandwidth recognition in Julia.
WorMe: A user-oriented software for <em>Caenorhabditis elegans</em> length determination
WorMe: A user-oriented software for <em>Caenorhabditis elegans</em> length determination - Published in JOSS (2025)
molify: Molecular Structure Interface
molify: Molecular Structure Interface - Published in JOSS (2025)
dispersiveshallowwater.jl
A Julia library of structure-preserving numerical methods for dispersive wave equations
grepq
grepq: A Rust application that quickly filters FASTQ files by matching sequences to a set of regular expressions - Published in JOSS (2025)
gibbonNetR
gibbonNetR: an R Package for the Use of Convolutional Neural Networks for Automated Detection of Acoustic Data - Published in JOSS (2025)
traffic_system_yolo
It utilizes the YOLO for detecting the vehicle and then changing the lights dynamically
gtexr
gtexr: A convenient R interface to the Genotype-Tissue Expression (GTEx) Portal API - Published in JOSS (2025)
phase_boundary_interfacial_excess
A collection of scripts accompanying the manuscript.
qubit_simulation
Simulating the evolution of a quantum system on a superconducting chip, with the goal of finding patterns across different system sizes.
gedidb
A toolbox for processing and providing Global Ecosystem Dynamics Investigation (GEDI) L2A-B and L4A-C data
dql-racing-car
This repository contains a project I created for my deep reinforcement learning course at The University of Victoria
yolov5-fighter-jet
yoloV5 model trained to detect features on a fighter jet simulator
muvi
A multi-view latent variable model with domain-informed structured sparsity for integrating noisy feature sets.
arpackmac
A set of Julia modules to diagonalise TB Hamiltonians for very large MAC fragments.
star_lifting
A first-year hobby project with Dr. Kipping. Caclulating the dM/dt which keeps L constant, or the mass loss required in order maintain a constant luminosity which keeps a planet habitable.
universc
UniverSC: a flexible cross-platform single-cell data processing pipeline
pmv-ads-2024-1-e5-proj-empext-t6-kezuka-styles-agenda
pmv-ads-2024-1-e5-proj-empext-t6-kazuka-styles-barber created by GitHub Classroom
handable
handable is an application that draws only the user's hand on the entire desktop screen. During a presentation, the user can use his or her hands to communicate various gestures.
gtk-fortran
gtk-fortran: a GTK+ binding to build Graphical User Interfaces in Fortran - Published in JOSS (2019)
flowdock
A geometric flow matching model for generative protein-ligand docking and affinity prediction. (ISMB 2025)
hasher
Generate hashes for files and folders. Aimed at file/folder comparison, not encryption.
mixing-ann
Repository for the generation of 100k CFD simulations of mixing systems and the training of an ANN predicting the power consumption
recipic
It is a tool that could transfer the procedural text into visual symbols.