GitHub
methylation-pipeline
A Python pipeline for filtering and visualizing DNA methylation data by patient ID and treatment timepoint. Built for cfDNA or cancer methylation studies using Excel-based input files.
vericert
A formally verified high-level synthesis tool based on CompCert and written in Coq.
tristan-rat-modelling
Kinetic analysis using the TRISTAN rat assay for transported-mediated drug inhibition
fuzzyclara
fuzzyclara: Efficient Medoid-based Clustering Algorithms for Large and Fuzzy Data - Published in JOSS (2025)
manculta
Research compendium for the manuscript Pesigan, I. J. A., Russell, M. A., Chow, S.-M. (Under Review). Common and Unique Latent Transition Analysis (CULTA) as a Way to Examine the Trait-State Dynamics of Alcohol Intoxication. https://doi.org/10.0000/0000000000.
pvsc48-tracker-terrain-loss-manuscript
Improved modeling of PV solar power for trackers on sloping terrain. Available online: https://doi.org/10.1109/JPHOTOV.2021.3114599
hisat2-pipeline
A pipeline to automatically perform an RNA-seq analysis using HISAT2 and stringtie
cz-path
Commitizen plugin that prefixes commit messages with the common path or prefix of staged files.
complejidad_economica_empleo
Cálculos de Complejidad Económica utilizando datos de empleo
ifup-systemd-resolved
Hook for openfortivpn to set up DNS with systemd-resolved.
ipv6-config-update
Update IPv6 CIDR in config files and restart relevant systemd units.
fanti-mechanical-dating-analysis
Scripts and viscoelastic modelling for the critical analysis of Fanti's mechanical dating method applied to ancient flax fibres.
pytseb
A python Two Source Energy Balance model for estimation of evapotranspiration with remote sensing data
pcmdi_metrics
Open-source Python package for Systematic Evaluation of Climate and Earth System Models
FRAGMENT-MNP
FRAGMENT-MNP: A model of micro- and nanoplastic fragmentation in the environment - Published in JOSS (2025)
fenicsr13
A Tensorial Mixed Finite Element Solver for the Linear R13 Equations Using the FEniCS Computing Platform (Mirror from https://git.rwth-aachen.de/lamBOO/fenicsR13).
edgebuildings
Simulation model to project the global energy demand in the buildings sector
privacyguides.org
Protect your data against global mass surveillance programs.
knime-modified-tanimoto
Knime plugin for calculating distance of bitvector using Modifed Tanimoto similarity index
ezad
This respository hosts the code for implementing the EZSD algorithm (WACV2024)
footprints
Used for calculation of measurement footprint of gas flux by an eddy covariance station.
highered_payrollaudit_system
A Python-based system for higher education institutions that performs payroll reconciliation and compliance auditing. Ensures accuracy between HR and Payroll systems while maintaining audit standards.
LMDiskANN.jl
LMDiskANN.jl: An Implementation of the Low Memory Disk Approximate Nearest Neighbors Search Algorithm - Published in JOSS (2025)
glac_by_volc
Repository for code used to analyse glaciers surrounding volcanoes.
suzublog
A minimalist and fast Next.js blog template, one-click deploy, writing in Markdown. 基于 Next.js 的博客模板，一键启动，简易配置，使用 Markdown 撰写你的文章。
WunDeeDB.jl
WunDeeDB.jl: An easy to use, zero config, WAL, SQLite backend vector database - Published in JOSS (2025)
CompressedBeliefMDPs.jl
CompressedBeliefMDPs.jl: A Julia Package for Solving Large POMDPs with Belief Compression - Published in JOSS (2025)
azllm
A Python package that provides an easier user interface for multiple LLM providers.
SwiftPol
SwiftPol: A Python package for building and parameterizing in silico polymer systems - Published in JOSS (2025)
manuls
A program for the electrostatic catalysis of chemical rections. MANULS finds the smallest electric field that removes the reaction barrier.
AirFogSim
AirFogSim: A Python Package for Benchmarking Collaborative Intelligence in Low-Altitude Vehicular Fog Computing - Published in JOSS (2025)
planetary-code-collection
Thermal, Ice Evolution, and Exosphere Models for Planetary Surfaces
rak-communities-cuda
Design of CUDA-based Label Propagation Algorithm (LPA), aka RAK, for community detection.
cuisto
cuisto: A Python package to quantify neurohistological data from QuPath and ABBA - Published in JOSS (2025)
GBNet
GBNet: Gradient Boosting packages integrated into PyTorch - Published in JOSS (2025)
leiden-communities-openmp-heuristic-dynamic
Design of OpenMP-based Dynamic Leiden algorithm for community detection, with speedy heuristics.
rak-split-communities-openmp
Design of OpenMP-based Parallel Label Propagation Algorithm (LPA) for community detection, with no internally-disconnected communities.