simulist • Science 67%

An R package for simulating line lists

powerfactory-tools • Science 75%

A Python toolbox for the (external) control of DIgSILENT PowerFactory.

times_model • Science 23%

The Integrated MARKAL-EFOM System (TIMES) - a bottom-up optimization model for energy-environment systems

baysc: An R package for Bayesian survey clustering • Science 87%

baysc: An R package for Bayesian survey clustering - Published in JOSS (2026)

biodiscvr: Biomarker Discovery Using Composite Value Ratios • Science 87%

biodiscvr: Biomarker Discovery Using Composite Value Ratios - Published in JOSS (2026)

Napari-3D-Counter: A manual cell counter for napari • Science 87%

Napari-3D-Counter: A manual cell counter for napari - Published in JOSS (2026)

PySGN: A Python package for constructing synthetic geospatial networks • Science 87%

PySGN: A Python package for constructing synthetic geospatial networks - Published in JOSS (2026)

evoxels: A differentiable physics framework for voxel-based microstructure simulations • Science 87%

evoxels: A differentiable physics framework for voxel-based microstructure simulations - Published in JOSS (2026)

OptiGob: A decision support tool for Agriculture, Forestry and Other Land Use transitions • Science 87%

OptiGob: A decision support tool for Agriculture, Forestry and Other Land Use transitions - Published in JOSS (2026)

Tissue Data Explorer: a website template for presenting tissue sample research findings • Science 95%

Tissue Data Explorer: a website template for presenting tissue sample research findings - Published in JOSS (2026)

targene-pipeline • Science 44%

Nextflow pipeline for Targeted-Learning of genetic effects

SkyRank: a unified toolkit for Skyline ranking, benchmarking, and visualization • Science 87%

SkyRank: a unified toolkit for Skyline ranking, benchmarking, and visualization - Published in JOSS (2026)

etl-forge • Science 54%

ParaDigMa: a Python toolbox for extracting Parkinson's disease digital biomarkers from daily life wrist sensor data • Science 92%

ParaDigMa: a Python toolbox for extracting Parkinson's disease digital biomarkers from daily life wrist sensor data - Published in JOSS (2026)

rmcmc • Science 57%

Robust Markov chain Monte Carlo methods in R

datatidy24sta5069z • Science 44%

Tidy data for analysis for STA5069Z course

xr_fresh: Automated Time Series Feature Extraction for Remote Sensing & Gridded Data • Science 93%

xr_fresh: Automated Time Series Feature Extraction for Remote Sensing & Gridded Data - Published in JOSS (2025)

Chemical Recommender System: Replacement Suggestions for Small Molecules • Science 87%

Chemical Recommender System: Replacement Suggestions for Small Molecules - Published in JOSS (2026)

SpectralUnmixing • Science 44%

Spectral unmixing, oriented towards imaging spectroscopy data. Lots of flavors included.

MujocoROS2Control: Seamless MuJoCo Integration with ROS 2 for Robot Simulation and Control • Science 87%

MujocoROS2Control: Seamless MuJoCo Integration with ROS 2 for Robot Simulation and Control - Published in JOSS (2025)

emgflow • Science 44%

Github repository for the EMGFlow Python package.

MatrixBandwidth • Science 44%

Fast algorithms for matrix bandwidth minimization and matrix bandwidth recognition in Julia.

WorMe: A user-oriented software for <em>Caenorhabditis elegans</em> length determination • Science 87%

WorMe: A user-oriented software for <em>Caenorhabditis elegans</em> length determination - Published in JOSS (2025)

molify: Molecular Structure Interface • Science 87%

molify: Molecular Structure Interface - Published in JOSS (2025)

dispersiveshallowwater.jl • Science 67%

A Julia library of structure-preserving numerical methods for dispersive wave equations

grepq — Peer-reviewed • Science 98%

grepq: A Rust application that quickly filters FASTQ files by matching sequences to a set of regular expressions - Published in JOSS (2025)

gibbonNetR — Peer-reviewed • Science 93%

gibbonNetR: an R Package for the Use of Convolutional Neural Networks for Automated Detection of Acoustic Data - Published in JOSS (2025)

gtexr — Peer-reviewed • Science 98%

gtexr: A convenient R interface to the Genotype-Tissue Expression (GTEx) Portal API - Published in JOSS (2025)

gtk-fortran — Peer-reviewed • Science 54%

gtk-fortran: a GTK+ binding to build Graphical User Interfaces in Fortran - Published in JOSS (2019)

portalcasting — Peer-reviewed • Science 59%

portalcasting: Supporting automated forecasting of rodent populations - Published in JOSS (2022)

Unishox — Peer-reviewed • Science 98%

Unishox: A hybrid encoder for Short Unicode Strings - Published in JOSS (2022)

dataaimsr — Peer-reviewed • Science 93%

dataaimsr: An R Client for the Australian Institute of Marine Science Data Platform API which provides easy access to AIMS Data Platform - Published in JOSS (2021)

chirps — Peer-reviewed • Science 93%

chirps: API Client for the CHIRPS Precipitation Data in R - Published in JOSS (2020)

iheatmapr — Peer-reviewed • Science 95%

iheatmapr: Interactive complex heatmaps in R - Published in JOSS (2017)

rnassqs — Peer-reviewed • Science 95%

rnassqs: An R package to access agricultural data via the USDA National Agricultural Statistics Service (USDA-NASS) 'Quick Stats' API - Published in JOSS (2019)

rtweet — Peer-reviewed • Science 46%

rtweet: Collecting and analyzing Twitter data - Published in JOSS (2019)

containerit — Peer-reviewed • Science 95%

containerit: Generating Dockerfiles for reproducible research with R - Published in JOSS (2019)

mitolina — Peer-reviewed • Science 93%

mitolina: MITOchondrial LINeage Analysis - Published in JOSS (2019)

nasapower — Peer-reviewed • Science 95%

nasapower: A NASA POWER Global Meteorology, Surface Solar Energy and Climatology Data Client for R - Published in JOSS (2018)

https://github.com/justwhit3/key-manager • Science 44%

A desktop app for password management and creation, developed using Qt.

separable_phase_plane_symmetries • Science 44%

This project generates the figures of the phase plane symmetries of separable models in biology.

eprop-snn • Science 44%

crackpy • Science 49%

Crack Analysis Tool in Python (CrackPy) - automatic detection and fracture mechanical analysis of (fatigue) cracks using digital image correlation

ipa • Science 44%

warlof-main • Science 44%

factchecks.br • Science 67%

Collection of Portuguese Fact-Checking Benchmarks.

collectionbuilderdemo • Science 44%

Demo of collection builder

cloud-forensics-google-drive • Science 44%

Simple PoC for cloud forensics (study project; IMT4114) using the Google Drive API to retrieve files meta data and file changes, outputting it to JSON.

segmentation-and-htr-models • Science 57%

Repository for all the HTR models made from Gallicorpora data

ragrug • Science 49%

RagRug

genai • Science 44%

active-learning-for-water-segmentation • Science 44%

wtpose • Science 54%

WTPose: Waterfall Transformer for Multi-person Pose Estimation

matx_workingversion • Science 44%

thermotar • Science 44%

A library for analysing LAMMPS Simulation output

low-complexity-acoustic-scene • Science 44%

Neural Network for Low Complexity Acoustic Scene Classification

knime-sygma • Science 67%

KNIME nodes for Sygma

ussie • Science 44%

What the Package Does (One Line, Title Case)

archivematica_gradio • Science 44%

A demonstration of Archivematica and Gradio.

code-smells-react • Science 44%

mortalityssm • Science 54%

State-space models for statistical mortality projections

healthkitonomh • Science 67%

Converts HealthKit data to Open mHealth/IEEE 1752 schemas

ellislabuk.github.io • Science 44%

elvincds • Science 44%

An advanced and enhanced rebirther-like cooldowns tracker addon for World of Warcraft 3.3.5

elicitspeechweb • Science 44%

Browser app for eliciting speech samples and uploading the resulting recordings directly to a LaBB-CAT annotation store

octapy • Science 44%

Ocean Connectivity And Tracking Algorithms

gunwomen • Science 44%

sample

spie • Science 44%

langchain • Science 44%

numerical-methods-for-computing-integrals-and-solving-odes • Science 44%

This repository contains the code use in my bachelor thesis in Numerical Method for ODE's at Bocconi University as part of my bachelor's degree in Mathematical and Computing Sciences for Artificial Intelligence

master-thesis • Science 44%

One Bit at a Time: Impact of Quantisation on Neural Machine Translation

csc591_group5_lua2py_2 • Science 54%

expose • Science 67%

EXPOSE: Experimental Performance Evaluation of Stream Processing Systems Made Easy

collectorbuilder • Science 44%

memoized_coduals • Science 44%

Shows that it is possible to implement reverse mode autodiff using a variation on the dual numbers called the codual numbers

datalark • Science 54%

Like the mudlark finding treasures on the foreshore, the datalark seeks treasures hidden within messy data!

plots-model-comparison • Science 57%

aiida-seigrowth • Science 44%

green-hydrogen-gap • Science 44%

Code to reproduce all figures for the paper: The green hydrogen ambition and implementation gap

my-articles-czech-news-dataset • Science 44%

opengl-pong • Science 44%

OpenGL high resolution graphics remaster of the classic Pong game inspired by learnopengl.com

adri-ardu-scope • Science 44%

Creates the basic functionality of an Oscilloscope (plus Spectrum Annalyser and cross-correlation scope) from a very low cost Arduino to allow the ability to explore signals, collect data and complete high-school/University laboratories even when students are completing portions of their studies remotely.

cvrp-decomposition • Science 67%

Decomposition Strategies for Vehicle Routing Heuristics

code2snapshot • Science 57%

ICMLA'22: Code2Snapshot

mobkp • Science 44%

Algorithms for the Multi-Objective Knapsack Problem (MOBKP)

global-residual-topography • Science 44%

Database of global residual topographic estimates

esmfold_ppi • Science 44%

eofs-cookbook • Science 67%

Cookbook covering empirical orthogonal function (EOF) analysis and examples of its application to climate data

memit_commonsense • Science 54%

asdf-openssl • Science 44%

asdf openssl plug-in

sead • Science 44%

Source code for SEAD Lab website

dual-port-ram-with-dual-clock • Science 44%

Dual Port RAM with dual clock in Verilog HDL

rotating_shallow_water_verification_suite • Science 67%

mrisegmentation • Science 67%

🧠 Automatic MRI segmentation pipeline for consistent FEM and BEM mesh creation from MRI scans of human heads

a-nonlinear-model-predictive-control-strategy-for-autonomous-racing-of-scale-vehicles • Science 49%

A Nonlinear Model Predictive Control (NMPC)-based algorithm aimed at controlling a scale car model for autonomous racing

mbag-bodem • Science 44%

mee-starve-code • Science 44%

Code and data used in the Methods in Ecology and Evolution publication for the starve package

https://github.com/aksw/llm-kg-bench • Science 49%

LLM-KG-Bench is a Framework and task collection for automated benchmarking of Large Language Models (LLMs) on Knowledge Graph (KG) related tasks.

greek-complexity • Science 44%

Query XML treebank to explore syntactic complexity in Ancient Greek

cutlass • Science 44%