GitHub
IGraph/M
IGraph/M: graph theory and network analysis for Mathematica - Published in JOSS (2023)
complementarity
Analysis of complementarity of spatial interactions in spider monkeys
EvoDynamics.jl
EvoDynamics.jl: a framework for modeling eco-evolutionary dynamics - Published in JOSS (2022)
quadcleanR
quadcleanR: An R Package for the Cleanup and Visualization of Quadrat Data - Published in JOSS (2022)
stats-base-ndarray-dcovarmtk
Compute the covariance of two one-dimensional double-precision floating-point ndarrays provided known means and using a one-pass textbook algorithm.
au-ecoscience-2023
Seminar at Dept Ecoscience, Aarhus University, March 8th 2023
redacted-contextual-question-answering
Data for a new question answering task, along with associated code
near-linear-cophenetic-distance
Calculating generalized Cophenetic Distances in near-linear time under any Lp norm.
rsqkit
Research Software Quality Kit - a resource for helping researchers improve the quality of software they write
movement
Mesh movement methods for finite element problems solved using Firedrake
draft-library-weeding-2025
Weeding considerations: methods, guidelines, and photo examples
xchaindatagen
A cross-chain data generator. Contains a data extractor and a cross-chain transaction generator for multiple cross-chain protocols/bridges
quarto-language-cell-decorator
Quarto extension to add a decorator to the code cells to display the language name.
llm-log-analyzer
A small python file that uses a local LLM, such as ollama, to analyze text files given a prompt. Designed for log files
adaptivemomentclosure
Parameter identification for chemical reaction networks using adaptive moment closure
AuditoryStimuli.jl
AuditoryStimuli.jl: A Julia package for generating real-time auditory stimuli - Published in JOSS (2021)
c14bazaar
R Package - Download and Prepare C14 Dates from Different Source Databases
2024-07-24-ucl-swc
Software Carpentry Webpage for UCL-ARC's summer SWC workshop
fintech
复旦大学金融科技与数据智能研究室 (Fudan University Fintech and Data Intelligence Laboratory)
samntrek
Locally deployable search tool to explore local Salmonella epidemiology in a global context
cl-pandoc-filters
This is a collection of Pandoc filters used by Caltech Library's Digital Library Development Groups
Easy3D
Easy3D: a lightweight, easy-to-use, and efficient C++ library for processing and rendering 3D data - Published in JOSS (2021)
mlflow-auth-gui
A web application that provides a Web GUI to the MLflow Authentication API
ssembatya-etal_2025_submitted_to_applied_energy
Meta repository for data and code associated with the Ssembatya et al. 2025 submission to Applied Energy
geronimo-etal_2024_naturalhazardsreview
Tradeoff analysis for flood adaptation pathways in Ortley Beach, New Jersey
face-detection-mtcnn-cropping-pipeline
A complete face detection and cropping pipeline using MTCNN, including EXIF orientation correction, metadata extraction from filenames, and structured Excel logging. This tool is designed for high-quality biometric data preprocessing from mobile and camera-acquired images.
nav-artefact-model
Code for reproducing "Resolving artefacts in voltage-clamp experiments with computational modelling: an application to fast sodium current recordings"
figurate_numbers
Figurate Numbers generates 241 infinite sequences of plane, space, and multidimensional figurate numbers based on the book ‘Figurate Numbers’ (2012) by Elena Deza and Michel Deza. The methods are implemented using the Enumerator class and are designed for use in your math projects or in Sonic Pi.
anionic_clar_fullerene_construction
Constructions of fullerenes that maximize the p-anionic Clar number for p > 0 .
RetentionParameterEstimator
Estimation of thermodynamic parameters for the interaction of analytes with a stationary phase in GC.
powerlinearitytradeoff
Accompanying files for the paper Power Linearity Trade-off
2022_dcpt_let
MC particle transport simulations for the 2022 LET-measurements at DCPT
minas
Repository of proposed and combined MIxS + MInAS standardised metadata checklists using LinkML
pgsc_calc
The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation
nf-core-transcriptcorral
NF-core transcript corral pipeline to perform de novo assembly of RNAseq reads.
master-thesis
Master Thesis - Exploration and (further) development of an alternative navigation paradigm to promote critical evaluation skills in the use of user interfaces
navigate-companion-framework
Official methodology for the Navigate Support Companions — a framework for ethical, AI-powered emotional support tools. Grounded in over 160 books, clinical thinking, and real-world prompt analysis.
bacannot
Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.
publication-figure-retrieval
This tool provides a method for retrieving publication figure images from NIH's Entrez API based on a list of species.
wnstatmech
Python package to compute the thermodynamics of fermions and bosons.
2024_kdvh_rr
Code to reproduce experiments in paper on hyperbolic relaxation of KdV equation.
RHEOS.jl -- A Julia Package for Rheology Data Analysis
RHEOS.jl -- A Julia Package for Rheology Data Analysis - Published in JOSS (2019)
stats-base-ztest-one-sample-results-float64
Create a one-sample Z-test double-precision floating-point results object.
gcd-biologic
Python script to read and plot galvanostatic charge-discharge data from Biologic equipment.
fastapi-neo4j
Template for building FastAPI applications with Neo4j(neontology).
entropic-spacetime-framework
repo.host("ESF manuscript"); type="meta-theoretical proposal"; goal="unify physics & emergent complexity"; fields=; mechanism="resonant coupling"; addresses=; speculates=["consciousness", "QC", "life"]; status="living document"; updates=["derivations", "simulations", "feedback"]; invite_collaborators(["physics", "cosmology", "neuroscience", "AI"]).
