GitHub
optimeo
OPTIMEO is a package doubled by a web application that helps you optimize your experimental process by generating a Design of Experiment, generating new experiments using Bayesian Optimization (BO), and analyzing the results of your experiments using Machine Learning models.
aims-dscbi
Data science course for Rwanda national statistical system (NSS) staff
https://github.com/amlalejini/alife-2025-env-conn
Holds supplemental materials, code, configuration settings, et cetera for 2025 ALife conference paper, "Environmental connectivity influences long-term evolutionary outcomes"
mitos_scripts.jl
Command Line Scripts for the MIToS Package to Analyze Protein Sequence and Structure
https://github.com/andim/pyrepseq
Python library for immune repertoire analysis
https://github.com/ankitbarik/topo_nutation
Code and figures for paper on nutation and dissipation due to topography at the core mantle boundary
https://github.com/annarufas/rufas_etal_2024_grl
Code and data necessary to reproduce the figures in our study "Can we Constrain Geographical Variability in the Biological Carbon Pump's Transfer Efficiency from Observations?".
https://github.com/ansleybrown1337/lysimeter-analysis
Python package that processes and analyzes weighing lysimeter data for quantifying crop water use (i.e., evapotranspiration).
https://github.com/dmetivie/smoothperiodicstatsmodels.jl
A Julia package for time series and other models with smoothly varying periodic parameters
https://github.com/ap6yc/dccr
Deep Clustering Context Recognition (DCCR); materials for the upcoming paper "Lifelong Context Recognition via Online Deep Feature Clustering."
mtcm-kd
multi-teacher cross modal knowledge distillation for brain tumor segmentation
breastdcedl
BreastDCEDL Pretreatment MRI scans of 2070 Breast cancer patients. A Deep Learning-Ready DCE-MRI Breast Cancer Dataset from I-SPY2 and I-SPY1 trials (1,2 and DUKE.
ppl-cd-pcd-sist-int-2024-1-sleepresearch-2024-1
ppl-cd-pcd-sist-int-2024-1-sleepresearch-2024-1 created by GitHub Classroom
https://github.com/aria-systems-group/pddltosim
Source code for abstraction construction from PDDL, strategy synthesis, and visualization using Pybullet
https://github.com/dmetivie/randomizedquasimontecarlo.jl
Some randomization methods for Randomized Quasi Monte Carlo e.g. scrambling, shift
https://github.com/arkokupski-wat/bn-field-hypothesis
Hypothesis about gravity-induced BN fields (just for fun) #AlternativePhysics #DarkMatter #QuantumTorsion
csci-4511w-final
My final project for CSCI 4511W at the University of Minnesota
https://github.com/astrazeneca/diffabxl
The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs", formerly titled "Benchmarking Generative Models for Antibody Design".
idf-external-hw-drivers
An assortment of drivers compatible with ESP IDF developed, tried, and qualified as working
run-cff-validator
Add a citation file to this repo and run the cff-validator GitHub Action
https://github.com/b-cubed-eu/dissmapr
Workflow for Compositional Dissimilarity and Biodiversity Turnover Analysis
https://github.com/barahona-research-group/severability
Code for the severability component quality function
pat_qgis_plugin
PAT is a QGIS plugin containing a collection of tools for processing precision agriculture data.
xsrecency
Package for incidence estimation via recency assays with single time-point cross-sectional data collection
cellsamsegmentation-pluripotent-differentiation
Perform CellSAM segmentation interactively
https://github.com/benjaminwehnert1008/deepmutscan
nf-core/deepmutscan is a reproducible, scalable, and community-curated pipeline for analyzing deep mutational scanning (DMS) data using shotgun DNA sequencing.
graphfragments.jl
Implementation of Graph Fragmentation in serial and in parallel.
https://github.com/bgeedb/bgee_pipeline
Source code of the Bgee pipeline used to build the Bgee database
trapi-predict-kit
🧰 A package to help create and deploy Translator Reasoner APIs (TRAPI) from any prediction model exposed as a regular python function.
superdrops-in-action
Various plotting scripts and applications of CLEO superdroplet model
distilabel
Distilabel is a framework for synthetic data and AI feedback for engineers who need fast, reliable and scalable pipelines based on verified research papers.
terraform-aws-secretsmanager-for-provider-secrets
A _coupled_ pattern for sourcing provider secrets from AWS SecretsManager
sharetraitdatabase
ShareTrait Database — a relational SQL database providing a structured implementation of the ShareTrait data. It includes the full schema definition, data tables and supporting documentation.
2017-10-19-universitybotswana
This is a repository for the Software Carpentry workshop that will take place from 19 - 20 October at the University of Botswana
avoiding-collinearity
Code and tests for determining an upper bound on the number of collinear points in an infinite walk on a finite set of vectors in Z^3.
pylaserpulse
A simulation toolbox for modelling laser pulse propagation through nonlinear, dispersive, active, and passive optical fibre systems in python.
stats-strided-dsnanmeanpn
Calculate the arithmetic mean of a single-precision floating-point strided array, ignoring NaN values, using a two-pass error correction algorithm with extended accumulation, and returning an extended precision result.
stats-strided-meanors
Calculate the arithmetic mean of a strided array using ordinary recursive summation.
synthnn
A Python package for estimating treatment effects using Synthetic Nearest Neighbors
2025-05-27-uw
Website for the Software Carpentry Workshop at the University of Washington on May 27–30, 2025.
mhd-2d-sphere
These Python scripts support the findings of our study, Nakashima & Yoshida (2024).
runtime-info-es
An ECMAScript (JavaScript & TypeScript) module for runtime information.
keploy
Unit, API & Integration Testing Agent for Developers. Generate tests, mocks/stubs for your APIs that actually work!
Pore2Chip
Pore2Chip: All-in-one python tool for soil microstructure analysis and micromodel design - Published in JOSS (2025)
minify-bibtex.sh
A tool to shorten author, editor, journal, and booktitle in a BibTeX file.
spinefe-benchmark
Code and instructions to reproduce the analyses from our study comparing linear and nonlinear finite element models of vertebral strength across the thoracic and lumbar spine using the VERSE19 dataset. Includes image data, results and visualization scripts to support full reproducibility.
enviroatlas_v4
EnvrioAtlas migration to JS4. Easy to use, interactive mapping application to access hundreds of maps showing environmental data
