GitHub
random-array-beta
Create an array containing pseudorandom numbers drawn from a beta distribution.
cldla
workflow to identify QTLs using mixed linear models and variance component estimation
notebook-template
Notebook template repository for making research code deposit in an academic repository and DOI mining with Zenodo
ogd-api-data
Repository for the on-demand event/feature-access API for OpenGameData
service-finder
A program to monitor and find dns-sd services in the network. Printing IP and name.
kalamari
:octopus: A curated database of completed assemblies with taxonomy IDs
qugradlab
An extension to the Python package QuGrad that implements common Hilbert space structures, Hamiltonians, and pulse shapes for quantum control.
dinocut
A image processing pipline for object detection using Grounding Dino, SAM, and BG Cut
braph-2
BRAPH 2.0 is a comprehensive software package for the analysis and visualization of brain connectivity data, offering flexible customization, rich visualization capabilities, and a platform for collaboration in neuroscience research.
romlimes
Repository with reproducible analyses from 2023 related to: Visser, R.M., 2015. Imperial timber? Dendrochronological evidence for large-scale road building along the Roman limes in the Netherlands. Journal of Archaeological Science 53, 243–254. doi:10.1016/j.jas.2014.10.017
mxene-ceramic-adhesion
DFT + ML framework for MXene–ceramic interfacial adhesion
reich_potential_ddis_nhs
Reich et al. - Prevalence and Duration of Potential Drug Interactions Among US Nursing Home Residents, 2018-2020
nl_pwl_optimization
Optimization over Non-Linear Non-Convex functions: a linearization approach
lymph-model
Python package for statistical modelling of lymphatic metastatic spread in head & neck cancer.
vasc-aop
Data and code for the "Innovative 3D-image analysis of cerebellar vascularization highlights transcriptomic changes in a murine model of apnea of prematurity" paper
argo-web-api
The ARGO Web API provides the Serving Layer of ARGO. It is comprised of a high performance and scalable datastore and a multi-tenant REST HTTP API, which is used for retrieving the Status, Availability and Reliability reports and the actual raw metric results.
land4health
Extract remote sensing metrics for spatial health analysis 🛰️, integrating vector-borne disease data. Easily compute areal and zonal statistics for infectious disease modeling in spatial epidemiology 🦠🏥
maskpls
Mask-Based Panoptic LiDAR Segmentation for Autonomous Driving, RA-L, 2023
stats-strided-dvarmtk
Calculate the variance of a double-precision floating-point strided array provided a known mean and using a one-pass textbook algorithm.
sandi
Sediment ANalysis and Delineation through Images. A free and open-source software to process particles from high-resolution underwater images and to analyze gravels from laboratory images. Designed for contour detection, shape characterization and size measurement. SANDI is intended to become a collaborative project.
cirp-lce-2025
Prospective Global Warming Potential of Australian Low-Emission Hydrogen in a Net-Zero Emission Context
densegastoolbox
Calculate density and temperature from observed molecular lines (CO, HCN, HNC, HCO+ etc)
rl-based-reactor-design-optimization
Source code for nuclear fusion reactor design optimization through deep reinforcement learning
energy-usage-prediction-weather
Weather-driven residential energy-demand modelling: data engineering + linear & logistic regression, appliance load profiling.
asp-language-support
A VSCode Extension that uses the Clingo Answer Set Solver (bundled), developed by Potassco (University of Potsdam).
array_wah
MATLAB tool for evaluating microphone array configurations via 3D localisation metrics. Generates error heatmaps and statistical insights to guide array design in acoustic research.
pyloric-network-simulator
Pure-Python, JAX-accelerate implementation of the pyloric circuit model described by Prinz et al (Nat. Neurosci., 2004)
https://github.com/dmetivie/periodichiddenmarkovmodels.jl
Non-homogenous Hidden Markov Models
pyrit
The Python Risk Identification Tool for generative AI (PyRIT) is an open source framework built to empower security professionals and engineers to proactively identify risks in generative AI systems.
avtandil-programming-language
Esoteric programming language adopted to Digital Humanities tasks. Python implementation. 🤖
https://github.com/brainlesion/preprocessing
preprocessing tools for multi-modal 3D brain imaging
https://github.com/dmetivie/pluto_export
Static export of my pluto notebooks and where I store other materials