GitHub
acquiring-linguistic-knowledge
Master's thesis of Theodor Amariucai, supervised by Alexander Warstadt and Prof. Ryan Cotterell.
turbo-turtle
A collection of solid body modeling tools for 2D sketched, 2D axisymmetric, and 3D revolved models.
ngl_tools
A collection of tools developed by the Next Generation Liquefaction modelers.
ascent
ASCENT (Automated Simulations to Characterize Electrical Nerve Thresholds): A pipeline for sample-specific computational modeling of electrical stimulation of peripheral nerves
augmentations-for-the-unknown
This repository contains the official implementation of "Data-Agnostic Augmentations for Unknown Variations - Out-of-Distribution Generalisation in MRI Segmentation", under review at MIDL 2025.
bam-to-fastq-qc
Conversion of files from BAM to FASTQ, including FASTQC & CCS.BAM file quality control (QC) steps.
libcirkit
a python framework to build, learn and reason about probabilistic circuits and tensor networks
betadescribe-code
Protein2Text: Providing Rich Descriptions from Protein Sequences
biomass_yieldtables
Generate yield tables generated by the Biomass_core module
legend-pygeom-hpges
Germanium detector geometries for radiation transport simulations
transformers-bart-pretrain
Script to pre-train hugginface transformers BART with Tensorflow 2
dlearn
High-level Deep learning, Linear algebra and scientific computing package in D
dsa-daily
Collection of LeetCode questions to ace the coding interview! - Created using [LeetHub](https://github.com/QasimWani/LeetHub)
trapsgpgp
Track and analyse Transient Attracting Profiles in the Great Pacific Garbage Patch
bd-lithium
A collection of source codes for network-based multi-omics analysis using integrated genome-wide association studies (GWAS) and transcriptomic data to identify genetic contribution into lithium response in patients with bipolar disorder (BD).
https://github.com/fertiglab/hpv2013analysis
Scripts to replicate the analysis from Fertig et al. (2013) https://doi.org/10.1371/journal.pone.0078127
active-and-passive-inhibition-experiment-cued-boss
Active and passive go-no-go Presentation® NeuroBehavioral Systems' experiment
fun-with-swarm
Dashboards made with Panel deployed directly from notebooks using Binder
cyclopsasciilink
An example application of the Cyclops Baseband with ASCII Text Transmissions
plotlaminarperformance
Scripts for plotting performance from telemetry collected from Laminar applications
mediaproject
FIles and codes (vignette) for the analyses performed in the paper "Identification of therapeutic targets in osteoarthritis by combining heterogeneous transcriptional datasets, drug-induced expression profiles, and known drug-target interactions"
scaffold-graph-vis
Basic utilities for visualising cdk-scaffold graphs using GraphStream
chemicalstructurecuration
Utilities for chemical structure curation and registration workflows based on the Chemistry Development Kit (CDK)
hl-detection-using-tsa
This repository contains MATLAB code for a Horizon Line Detection algorithm utilizing dynamic ROI generation via Time Series Models (ARIMA and GARCH). The approach offers fast, accurate HL detection in maritime videos, focusing on dynamic environmental conditions and including mechanisms for error correction and ROI adjustment.
twostepbranchingprocedure
Nested branch-and-bound algorithm to solve two-dimensional orthogonal packing problems
pyshqg
Python solver for the Marshall and Molteni (1993) quasi-geostrophic model.
dashdine
Aplicação utilizando ReactJS, React Native, NodeJS, Express & MongoDB para o projeto de 4 semestre da PUC Minas
ultralytics_ros
ROS/ROS 2 package for Ultralytics YOLOv8 real-time object detection and segmentation. https://github.com/ultralytics/ultralytics
yolov8-dmtnet
Source code used in the paper ‘Efficient Tuna Detection and Counting with Improved YOLOv8 and ByteTrack in Pelagic Fisheries’.
atlas
Automated Amortised Complexity Analysis of Self-Adjusting Data Structures
https://github.com/fertiglab/latent_ode
Code for "Latent ODEs for Irregularly-Sampled Time Series" paper
https://github.com/civicdatalab/ids-drr-odisha-risk-score-model
Intelligent Data Solution - Disaster Risk Reduction(IDS-DRR) is a system to assist flood management through data-driven ways. The repository contains the code for the Risk score model.
amp-bert-biochem
Research material on LLMs based on the Transformer architecture, with application in anti-microbian peptides classification
magwssufo
An OpenFOAM's utility function object for magnitude of wall shear stress.
swat-experiment
Paradigm FKA Swat kids updated. Now contains eyetracking, the ISI is created differently and the the the response window is changed.
augmentednet
A Roman Numeral Analysis Network with Synthetic Training Examples and Additional Tonal Tasks
riverrem
Make river relative elevation models (REM) and REM visualizations from an input digital elevation model (DEM).
scalar_codes
Codes for automating standard VASP and VASP-related calculations.
ogd-automation
A repository for automation scripts for moving OGD data around.
https://github.com/cjabradshaw/wealthwellbeingageingpop
Effects of ageing/declining populations on national-level indices of wealth and wellbeing
additional-texts
Additional texts that were easy to convert and that would benefit research
