GitHub
openmind
I use a simple model to investigate the epistemic value of open-mindedness. This repository contains the code for a model of the epistemic value of open-mindedness and for producing some figures.
https://github.com/jageo/pymatgen
Python Materials Genomics (pymatgen) is a robust materials analysis code that defines core object representations for structures and molecules with support for many electronic structure codes. It is currently the core analysis code powering the Materials Project.
axtreme
Development repo for the RaPiD project with extensions for Ax and BoTorch.
architxt
ArchiTXT is an open source Python library that transforms unstructured text into structured, searchable, and AI-ready data. It enables automated database generation and seamless data integration.
gemelos-digitales-proyecto-final-escalante-21212151-
Proyecto Final: Proceso de inflamación (3 poblaciones)
abc
Code accompanying the publication "Enhancing Bacterial Adhesion with Hydro-Softened Chitosan Films"
fastqrepair
A pipeline that can be used to recover corrupted FASTQ.gz files, drop or fix uncompliant reads, remove unpaired reads, and settles reads that became disordered
detaxizer
A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Removal is optional.
bayes-sampler-comparison
A comparison investigation of water sampling methods using Bayesian inference modeling as part of a 2023 study by the CSU Agricultural Water Quality Program
enolex
A repository of R codes and curated dataset for a Shiny web database titled "EnoLEX, a diachronic lexical database for the Enggano language". Access the database via the link below 👇.
reproducible-research-with-gpu-jupyter
This repository demonstrates how to use GPU-Jupyter for reproducible deep learning research with minimal setup effort..
sammyseq
Pipeline for Sequential Analysis of MacroMolecules accessibilitY sequencing (SAMMY-seq) data, to analyze chromatin state.
replicability-presentation-2022
Presentation on Lessons Learned after 1000 articles
splineomics
Timeseries analysis of -omics data can be carried out by fitting spline curves to the data and using limma for hypothesis testing. The obtained hits can be clustered based on the spline shape and then used for an overrepresentation (ORA) analysis.The R package SplineOmics streamlines this whole process and generates reports
crowdtangle-api-schema
Simple ontological representation of the CrowdTangle API to be used in a Tropy template
statrom
Python code to reproduce the results in our reduced order statFEM paper.
https://github.com/jageo/lobsterautomation
This is a package to reproduce the publication on Lobster automation
mbed-torch-fusion-os
MbedTorch FusionOS: Seamlessly merges Mbed OS with Torch ML models for the P-Nucleo-WB55 on Arm Cortex M4. Empowering edge computing with efficient ML deployment.
https://github.com/jageo/bam-jobflow-tutorial
This is an interactive jobflow tutorial for new users.
kececinumbers
Keçeci Numbers, Keçeci Sayıları, kececinumbers, Keçeci Conjecture
daef
Python language implementation of the Deep Autoencoder for Federated learning (DAEF).
mrs_lib
UAV C++ libraries, mostly ROS-related, part of the "mrs_uav_core" package.
timestamp-data-collection-for-tdc1-in-c
Data collection in C from TDC1 Time to digital converter for use in lab work and Bachelor thesis
openhands-versa
Code for the paper "Coding Agents with Multimodal Browsing are Generalist Problem Solvers"
analise_psicometrica_sqr20
Trabalho desenvolvido como parte das atividades do projeto 2024-2025 do Programa Unificado de Bolsas de Estudos para Apoio à Formação de Estudantes de Graduação (PUB-USP) sob a supervisão do Prof° Jorge Luis Bazán. Repositório também disponível em https://github.com/jlbazan/Analise_Psicometrica_SQR20.
PeriodicOrbits
Interface and algorithms for finding periodic orbits (stable or unstable) in dynamical systems
ptype-ml-cookbook
A short cookbook that is a companion to Unidata's CyberTraining project.
geoscopr-maps
Maps for the GEOSCOPR (Geospace and Exploration with Scientific COllaboration in Polar Regions) report for IPY5.
tesseract-retraining-pipeline
Intuitive interface for fine-tuning and retraining a Tesseract OCR language model
awesome-generative-ai
A curated list of Generative AI tools, works, models, and references
counterexamples-faudree-schelp
A repository to maintian the code used to find new (planar) counterexamples to a conjecture by Faudree and Schelp
texturedperovskitesolarcells.jl
Data repository to reproduce figures from manuscript
hubbard_cvm
Cluster Variation Methods for Fermions on the Lattice – Mathematical Foundations and Application to the Hubbard Model
visual-place-recognition-papers
Summary of papers on visual place recognition.
digitaltwins
Collection of peer-reviewed Digital Twins developed at the University of Birmingham in partnership with industrial collaborators.
py-ewr
Prototype tool for evaluating long-term watering plan environmental watering requirements.