GitHub
https://github.com/hbclab/networkneuroscience
Repository for scripts to run network analyses on neuroimaging data
https://github.com/hbeale/epinano
Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
https://github.com/jcbayley/vitamin_c
This will be the first official public release of the VItamin code base. VItamin is a python package for producing fast gravitational wave posterior samples.
https://github.com/jchiyah/exploring-mm-in-simmc2
Code and models for the paper 'Exploring Multi-Modal Representations for Ambiguity Detection & Coreference Resolution in the SIMMC 2.0 Challenge' published at AAAI 2022 DSTC10 Workshop
https://github.com/hbpmedical/mip-deployment
Deploy the Medical Informatics Platform
https://github.com/hbpmedical/mip_schema
Open-source Python package to manipulate Common Data Elements Metadata Schema for the Medical Informatics Platform (MIP).
https://github.com/jcj7292/mda-cnn
Paper https://www.sciencedirect.com/science/article/pii/S0045782521007015
https://github.com/jclutch/system-design-primer
Learn how to design large-scale systems. Prep for the system design interview. Includes Anki flashcards.
https://github.com/jcmcnch/global-rrna-univeral-metabarcoding-of-plankton
A central repository for the GRUMP (Global rRNA Universal Metabarcoding of Plankton) dataset, containing scripts for bioinformatic processing and retrieval of associated physical / geochemical measurements from publicly available data.
https://github.com/hbpmedical/heatmaply
Interactive Heat Maps for R Using plotly
https://github.com/jcmgray/abeliantensors
A library for Abelian symmetry preserving tensors in Python 3
https://github.com/jcmgray/opt_einsum_samples
Tensor network sample contractions in JSON format for testing opt_einsum.
https://github.com/hbrown18/e3sm
Energy Exascale Earth System Model source code.
https://github.com/hcdenbakker/seqsero
Salmonella serotyping from genome sequencing data
https://github.com/hcdenbakker/clonalframeml
ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
ml4gw
Torch utilities for doing machine learning in gravitational wave physics
https://github.com/jcmgray/numpy
The fundamental package for scientific computing with Python.
https://github.com/jcmgray/proggyleg
Cumulative points and other progress plots for the premier league
https://github.com/jcmontesherrera/jcmontesherrera
Config files for my GitHub profile.
https://github.com/jcmontesherrera/coralline-algae-vis-spectra
The VIS-spectra of the Antarctic coralline algae T. antarcticum: Coupling hyperspectral imaging with standard pigment and DNA tools
https://github.com/hcdp/ascdp
American Samoa Climate Data Portal web application
https://github.com/jcmontesherrera/tern-dronescape
General protocols and checklists for drone imagery and point cloud collection used for TERN's Dronescape and Naturescan projects.
https://github.com/jcmontesherrera/jcmh-phd-thesis-notebooks
Notebooks and scripts created during the course of PhD research chapters.
https://github.com/hcdp/hcdp
HCDP application for dissemination and visualizing climate data for the state of Hawai
https://github.com/hcdp/loggernet_station_data
Station metadata and conversion tables
https://github.com/hcdp/mesonet_station_parser
Code for parsing mesonet loggernet files into Tapis stream
https://github.com/hcdp/preliminary_ignition_probability_predictions
Workflow for creating ignition probability future prediction maps
https://github.com/hcdp/hcdp_file_explorer
a simple file explorer for HCDP data
https://github.com/hcdp/batch_run_workflows
Scripts to batch run HCDP workflow processes
https://github.com/cinrc/a-beluga-formalization-of-ccskp
Artifact for the paper "A Formalization of the Reversible Concurrent Calculus CCSKP in Beluga"
https://github.com/hcdp/mesonet_flags_container
A container for creating mesonet flags
https://github.com/hcdp/mesonet-tapis-ui
Tapis UI customized for mesonet/station display of data
https://github.com/hcdp/demo-container
A simple demo container for the Nov 17 2023 containerization training.
https://github.com/hcdp/timeseries_gen
Create timeseries docs for virtual stations
https://github.com/hcdp/metadata_updater
Container and abaco setup for metadata updates using github webhooks
https://github.com/hci-lab-ugspeechdata/banga_audio_transcription_app
App for Banga audio and Transcription
https://github.com/allfed/pytradeshifts
Contains code and documentation for the pytradeshifts model
https://github.com/hci-lab-um/gleyed-ahead
Gleyed-ahead - swipe-typing for eye-based interaction with type ahead functionality
https://github.com/hcigroupkonstanz/re-locations
Re-locations: Augmenting Personal and Shared Workspaces to Support Remote Collaboration in Incongruent Spaces
https://github.com/hcigroupkonstanz/around-the-smartphone
ARound the Smartphone: Investigating the Effects of Virtually-Extended Display Size on Spatial Memory
https://github.com/hcmlab/nova
NOVA is a tool for annotating and analyzing behaviours in social interactions. It supports Annotators using Machine Learning already during the coding process. Further it features both, discrete labels and continuous scores and a visuzalization of streams recorded with the SSI Framework.
https://github.com/hcmlab/facemesheditor
An Editor to manually adjust automatic Face Mesh Detections
targets-uahpc
A template repository with instructions on how to run a targets workflow using the UAz cluster
soar
[ICCV 2023] Official implementation of paper "SOAR: Scene-debiasing Open-set Action Recognition".
underagarose-analysis
Matlab script written by members of the parent lab for the purpose of tracking the migration of neutrophils in the underagarose chemotaxis assay. DOI: [INSERT HERE]
3d-powergrid-inspection
This repository contains the code developed for my MSc project titled "Exploring Photogrammetry for High-Fidelity 3D Model Generation: A Power Grid Inspection Study", as well as some of the results. The thesis was written in collaboration with SINTEF, and the degree issued by DTU. The full thesis can be downloaded from the below link.
hazardous-orienteering-problem
Code and instances for the Hazardous Orienteering Problem
shanqar
ShaNQar (Simulator of Network Quantique) is a photonic quantum network simulator.
pythonpaperghdistancesspheres
Python code to check some inequalities from the proof of d(S^3,S^4) computationally
ptpc
An algorithm for enumerating the minimum weight codewords of pre-transformed polar codes.