GitHub
https://github.com/ivis-at-bilkent/cd2sbgnml-webservice
An easily deployable small webservice to translate CellDesigner-SBGN-ML files with cd2sbgnml
oliver-mcmanamay_2025_scidata
A thematically consistent LULCC system for the conterminous United States adaptable to multiple MSD frameworks at a regional level. Using empirically derived spatial products, a series of contemporary base maps at a 30-m resolution were developed that support flexibility and interchangeability amongst multiple land classification systems.
https://github.com/ivis-at-bilkent/even
even: a tool to compare, edit, and synchronously lay out two or more networks...
stats-incr-nanskewness
Compute a corrected sample skewness incrementally, ignoring NaN values.
paper-halve-cost-of-addition
Halving the cost of quantum addition (among other things)
tulip
Tulip is a per unit length multiconductor transmission line and in-cell parameters solver
JointEnergyModels
A package for Joint Energy Models and Energy-Based Models in Julia.
adversarialrobustness.jl
An adversarial machine learning toolkit for Flux.jl neural networks
https://github.com/ivis-at-bilkent/cytoscape.js-qtip
A Cytoscape.js extension that wraps the QTip jQuery library
msgnn
Official code for the LoG2022 paper -- MSGNN: A Spectral Graph Neural Network Based on a Novel Magnetic Signed Laplacian.
scenery_builder
Model-to-model transformation of floorplan models to execution artefacts (including ROS simulation)
fwl-calliope
An equilibrium model for interior-atmosphere volatile partitioning on lava planets
https://github.com/ivis-at-bilkent/cytoscape.js-chola
Orthogonal layout for graphs with compound nodes
rfsd
The Russian Financial Statements Database (RFSD) is an open, harmonized collection of annual unconsolidated financial statements of the universe of Russian firms in 2011-2023. It is the first open data set with information on every active firm in the country, including non-filing firms.
https://github.com/ivis-at-bilkent/chilay
Chisio Layout (ChiLay) provides a graph layout framework along with a number of layout algorithms implemented in Java. Layout services can be used locally or remotely (through HTTP) from a server.
virtual-cat-programming-language-interpreter
This is a softaware component of the virtual Cross Array Task (CAT) platform that translates user actions, including gesture interactions and arranged visual programming blocks, into executable machine-readable instructions, a formal algorithm specified using the CAT programming language.
halfpipe
ENIGMA HALFpipe is a user-friendly software that facilitates reproducible analysis of fMRI data
https://github.com/ivis-at-bilkent/cytoscape.js-c-tsm
Compound-Topology Shape Metrics Approach
generalbfxpkg
An R package for data manipulation of general bioinformatics and clinical data.
https://github.com/ivis-at-bilkent/cytoscape.js-cosep
Compound Spring Embedder with Ports (CoSEP)
elucidatornf
A collection of workflows to stream together tools from within elucidator
https://github.com/ivis-at-bilkent/cose-lat
A tool for animation during CoSE layout to debug and improve the algorithm
autogalaxy_workspace
The PyAutoGalaxy Workspace: contains example scripts, datasets and more
https://github.com/ivis-at-bilkent/chilay.maven-repo
Automatically exported from code.google.com/p/chilay.maven-repo
complex-float64-base-identity
Evaluate the identity function for a double-precision complex floating-point number.
padre_sharp
Software to download, analyze, and process for the SHARP instrument of the NASA PADRE mission
pmv-si-2023-2-pe1-t2-conecta
pmv-si-2023-2-pe1-t2-conecta created by GitHub Classroom
goa-rockfish-cog
Empirical center of gravity estimates for Gulf of Alaska rockfish species. ESR contribution.
multicom_ligand
Comprehensive ensembling of protein-ligand structure and affinity prediction methods (CASP16)
latent_dirichlet_allocation
Topic modeling (LDA) extracts latent topics distributed across documents and represent them with most likely words.
pfr
Repository for formalization of the Polynomial Freiman Ruzsa conjecture (and related results)
plantilla-colecciones
Plantilla para construir sitios estáticos para colecciones documentales, desarrollada por el HD LAB-CONICET.
allophant
A multilingual phoneme recognizer capable of generalizing zero-shot to unseen phoneme inventories.
https://github.com/fgcz/iscb2017
This R package contains data and vignette files for a Pigeon Pea (Cajanus cajan) project from a Indo-Swiss Collaboration in Biotechnology (ISCB) training course on proteome informatics given from January 21th to January 25th 2017 at the National Research Centre on Plant Biotechnology (NRCPB) in New Delhi-110012 by JG, WEW, and CP.
phylophoenix
🔥🌿🐦🔥PhyloPHoeNIx: Pipeline for relatedness determination using PHoeNIx output.
xai-proteins
Insights into the inner workings of transformer models for protein function prediction
hipiler
Visual exploration of large genome interaction matrices with interactive small multiples.
https://github.com/fgcz/fcc
An automated rule-based processing tool for life science data.
phip-seq-tp-vac
Pipeline for analysis of the Treponema pallidum PhiP-Seq assay data @ Greninger Lab
torchgeo
TorchGeo: datasets, samplers, transforms, and pre-trained models for geospatial data
