e3sm_rrm • Science 44%

Energy Exascale Earth System Model source code. NOTE: use "maint" branches for your work. Head of master is not validated.

food-seg-103 • Science 44%

FoodSeg103 Dataset

oop-vs-procedural • Science 49%

Object-Oriented vs. Procedural: A Profiling Insight into Java Method Usage Patterns

fingernat-ml • Science 49%

Data accompanying the manuscript on SIFts- and ML-based methods in Virtual Screening for RNA binding ligands.

open-mmlab__mmengine • Science 44%

APGG - A Modular C++ Framework for Asymmetric Public Goods Games — Peer-reviewed • Science 100%

APGG - A Modular C++ Framework for Asymmetric Public Goods Games - Published in JOSS (2023)

A Python Tool for Predicting and Assessing Unconventional Rare-Earth and Critical Mineral Resources — Peer-reviewed • Science 93%

A Python Tool for Predicting and Assessing Unconventional Rare-Earth and Critical Mineral Resources - Published in JOSS (2023)

Molearn — Peer-reviewed • Science 95%

Molearn: a Python package streamlining the design of generative models of biomolecular dynamics - Published in JOSS (2023)

ElectricGrid.jl - A Julia-based modeling and simulation tool for power electronics-driven electric energy grids — Peer-reviewed • Science 98%

ElectricGrid.jl - A Julia-based modeling and simulation tool for power electronics-driven electric energy grids - Published in JOSS (2023)

libfork • Science 59%

A bleeding-edge, lock-free, wait-free, continuation-stealing tasking library built on C++20's coroutines

researchkitonomh • Science 54%

tomopt • Science 49%

TomOpt: Differential Muon Tomography Optimisation

qompass-template • Science 54%

Qompass GH Template

IGraph/M — Peer-reviewed • Science 95%

IGraph/M: graph theory and network analysis for Mathematica - Published in JOSS (2023)

complementarity • Science 67%

Analysis of complementarity of spatial interactions in spider monkeys

nim-lapper • Science 44%

fast easy interval overlapping for nim-lang

orthax • Science 49%

Orthogonal polynomials with JAX

EvoDynamics.jl — Peer-reviewed • Science 93%

EvoDynamics.jl: a framework for modeling eco-evolutionary dynamics - Published in JOSS (2022)

a3d3_graph • Science 49%

A3D3 Graph

quadcleanR — Peer-reviewed • Science 93%

quadcleanR: An R Package for the Cleanup and Visualization of Quadrat Data - Published in JOSS (2022)

kumomincostflow.jl • Science 44%

kgcl-java • Science 67%

KGCL for Java and ROBOT

stats-base-ndarray-dcovarmtk • Science 44%

Compute the covariance of two one-dimensional double-precision floating-point ndarrays provided known means and using a one-pass textbook algorithm.

trl_for_experiment • Science 44%

Repository for my research experiment using TRL

au-ecoscience-2023 • Science 67%

Seminar at Dept Ecoscience, Aarhus University, March 8th 2023

redacted-contextual-question-answering • Science 52%

Data for a new question answering task, along with associated code

econs • Science 44%

not in use for now

an-exploratory-data-analysis-on-traffic-accident-in-germany • Science 44%

near-linear-cophenetic-distance • Science 49%

Calculating generalized Cophenetic Distances in near-linear time under any Lp norm.

@li0ard/gost341194 • Science 44%

GOST R 34.11-94 hash function in pure TypeScript

flt • Science 44%

Ongoing Lean formalisation of the proof of Fermat's Last Theorem

rsqkit • Science 67%

Research Software Quality Kit - a resource for helping researchers improve the quality of software they write

stanford-cores-unix-command-line • Science 54%

Unix Command Line, Stanford CORES

algebra-notes • Science 44%

Notes for Algebra at the Undergraduate Level

movement • Science 44%

Mesh movement methods for finite element problems solved using Firedrake

pyam • Science 67%

draft-library-weeding-2025 • Science 44%

Weeding considerations: methods, guidelines, and photo examples

xchaindatagen • Science 54%

A cross-chain data generator. Contains a data extractor and a cross-chain transaction generator for multiple cross-chain protocols/bridges

quarto-language-cell-decorator • Science 44%

Quarto extension to add a decorator to the code cells to display the language name.

llm-log-analyzer • Science 44%

A small python file that uses a local LLM, such as ollama, to analyze text files given a prompt. Designed for log files

spectre_cocal • Science 49%

cocal_spectre • Science 49%

adaptivemomentclosure • Science 44%

Parameter identification for chemical reaction networks using adaptive moment closure

kromosynth-evaluate • Science 49%

websocket servers for evaluating (classifying) sounds.

AuditoryStimuli.jl — Peer-reviewed • Science 98%

AuditoryStimuli.jl: A Julia package for generating real-time auditory stimuli - Published in JOSS (2021)

c14bazaar • Science 49%

R Package - Download and Prepare C14 Dates from Different Source Databases

2024-07-24-ucl-swc • Science 52%

Software Carpentry Webpage for UCL-ARC's summer SWC workshop

fintech • Science 44%

复旦大学金融科技与数据智能研究室 (Fudan University Fintech and Data Intelligence Laboratory)

samntrek • Science 44%

Locally deployable search tool to explore local Salmonella epidemiology in a global context

2025-05-27-ucl-swc • Science 62%

improved_yolov8_obb • Science 44%

2023-06-ucl-hpc-online • Science 52%

cl-pandoc-filters • Science 52%

This is a collection of Pandoc filters used by Caltech Library's Digital Library Development Groups

Easy3D — Peer-reviewed • Science 93%

Easy3D: a lightweight, easy-to-use, and efficient C++ library for processing and rendering 3D data - Published in JOSS (2021)

stromboli_2nd • Science 54%

swarnadeepseth.github.io • Science 44%

Swarnadeep Seth's personal website

starplot • Science 44%

✨ Star charts and maps in Python

nanocall • Science 44%

mlflow-auth-gui • Science 67%

A web application that provides a Web GUI to the MLflow Authentication API

ssembatya-etal_2025_submitted_to_applied_energy • Science 49%

Meta repository for data and code associated with the Ssembatya et al. 2025 submission to Applied Energy

geronimo-etal_2024_naturalhazardsreview • Science 67%

Tradeoff analysis for flood adaptation pathways in Ortley Beach, New Jersey

timehive • Science 57%

Hierarchical moving-window statistical analysis for time series.

rl-traffic-mgmt • Science 54%

face-detection-mtcnn-cropping-pipeline • Science 44%

A complete face detection and cropping pipeline using MTCNN, including EXIF orientation correction, metadata extraction from filenames, and structured Excel logging. This tool is designed for high-quality biometric data preprocessing from mobile and camera-acquired images.

codetrace • Science 62%

nav-artefact-model • Science 52%

Code for reproducing "Resolving artefacts in voltage-clamp experiments with computational modelling: an application to fast sodium current recordings"

ds4owdanalytics • Science 67%

Dark data from the DS4OWD course

cfire • Science 67%

qc • Science 54%

pipeline for quality checking of both raw and annotated assemblies

figurate_numbers • Science 44%

Figurate Numbers generates 241 infinite sequences of plane, space, and multidimensional figurate numbers based on the book ‘Figurate Numbers’ (2012) by Elena Deza and Michel Deza. The methods are implemented using the Enumerator class and are designed for use in your math projects or in Sonic Pi.

anionic_clar_fullerene_construction • Science 44%

Constructions of fullerenes that maximize the p-anionic Clar number for p > 0 .

RetentionParameterEstimator • Science 54%

Estimation of thermodynamic parameters for the interaction of analytes with a stationary phase in GC.

webbotparser • Science 44%

:mag: R package to parse search engine results

cdcm_execution • Science 65%

powerlinearitytradeoff • Science 44%

Accompanying files for the paper Power Linearity Trade-off

2022_dcpt_let • Science 49%

MC particle transport simulations for the 2022 LET-measurements at DCPT

minas • Science 67%

Repository of proposed and combined MIxS + MInAS standardised metadata checklists using LinkML

pgsc_calc • Science 49%

The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation

nf-core-transcriptcorral • Science 44%

NF-core transcript corral pipeline to perform de novo assembly of RNAseq reads.

master-thesis • Science 54%

Master Thesis - Exploration and (further) development of an alternative navigation paradigm to promote critical evaluation skills in the use of user interfaces

tiegui • Science 54%

daima

pubmedmetatools • Science 54%

fitdist • Science 54%

fitdist is a python library for probability density fitting.

diffusers • Science 44%

fundus_disease_image_classification • Science 44%

navigate-companion-framework • Science 44%

Official methodology for the Navigate Support Companions — a framework for ethical, AI-powered emotional support tools. Grounded in over 160 books, clinical thinking, and real-world prompt analysis.

flows • Science 52%

Flow selection and analysis

aria-tools • Science 44%

Tools for exploiting ARIA standard products

lis-690-de • Science 44%

hdf • Science 44%

bacannot • Science 49%

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

lib213demo • Science 44%

publication-figure-retrieval • Science 54%

This tool provides a method for retrieving publication figure images from NIH's Entrez API based on a list of species.

wnstatmech • Science 44%

Python package to compute the thermodynamics of fermions and bosons.

stata-waffle • Science 44%

A Stata package for Waffle charts

async_tutorial • Science 44%

my-data • Science 44%

A collection of projects I am working on or have completed.

2024_kdvh_rr • Science 49%

Code to reproduce experiments in paper on hyperbolic relaxation of KdV equation.

modified-ultralytics • Science 44%

dual_lbr_fri_ros2_stack • Science 49%