GitHub
https://github.com/kmnhan/erlabpy
Complete python workflow for Angle-Resolved Photoemission Spectroscopy (ARPES)
https://github.com/openchemistry/tomviz
Cross platform, open source application for the processing, visualization, and analysis of 3D tomography data
https://github.com/patrickzib/dictionary
WEASEL 2.0 - A Random Dilated Dictionary Transform for Fast, Accurate and Constrained Memory Time Series Classification
https://github.com/aloncrack7/data-degradation-detector
Library to make stimations on data degradation
https://github.com/ajshajib/dolphin
Automated pipeline for lens modelling based on lenstronomy
https://github.com/desbordante/desbordante-core
Desbordante is a high-performance data profiler that is capable of discovering many different patterns in data using various algorithms. It also allows to run data cleaning scenarios using these algorithms. Desbordante has a console version and an easy-to-use web application.
https://github.com/ibridges-for-irods/ibridges
A wrapper around the python-irodsclient to allow for easy interaction with iRODS servers.
https://github.com/ambco-iscte/jask
A Library for Generating Questions about Learners' Code in Java
https://github.com/georgedouzas/imbalanced-learn-extra
Implementation of novel oversampling algorithms.
magicbathynet
Quick start guide for benchmarking MagicBathyNet dataset in learning-based bathymetry and pixel-based classification using Remote Sensing imagery.
https://github.com/annahedstroem/sanity-checks-revisited
[NeurIPS XAIA & Springer] Code and notebooks to paper "A Fresh Look at Sanity Checks for Saliency Maps"
https://github.com/anon0411/decoh_as_codom
Feedback-guided quantum circuits exploring codomain-zero as a structural condition. 구조 형성의 조건으로서 공역 0을 실험하는 피드백 기반 양자 회로.
https://github.com/aria-systems-group/regret_synthesis_toolbox
Source code for Regret synthesis for two-player turn-based game played on graphs - ICRA 22
IDEAS
Modelica library allowing simultaneous transient simulation of thermal and electrical systems at both building and feeder level.
https://github.com/arkokupski-wat/modified-spacetime-hypothesis
The hypothesis treats spacetime not as a passive backdrop for matter, but as an equal partner in physical transformations. The inspiration stems from explosive chemistry—specifically, how the detonation of high-energy materials mixtures) converts condensed matter into expanding gases and energy.
https://github.com/arkokupski-wat/g1g2-gravity-duality
🌌 G₁/G₂ Gravity Duality: Proves quantum & cosmic gravity are distinct phenomena.
https://github.com/arkokupski-wat/hypothesis-of-spontaneous-matter-antimatter-conversion
Hypothesis of Spontaneous Matter→Antimatter Conversion at Planck Densities
https://github.com/arkokupski-wat/subjective_time_as_emergent_information_processing
The Brain's Clock: From the Phoenix Equation to Holographic Consciousness
https://github.com/chen-yang-liu/awesome-change-captioning
🔥Collection of resources and papers
https://github.com/chen-yang-liu/git-rsclip
Git-RSCLIP pre-trained on 10 million Remote sensing image-text pairs
https://github.com/assert-kth/vrepair
open science repo of "Neural Transfer Learning for Repairing Security Vulnerabilities in C Code" https://arxiv.org/pdf/2104.08308
https://github.com/astrazeneca/topmodel
Uses simulated time-to-event data to model efficacy by prevalence-adjusted nAb titres using a time-varying Cox model.
gaunegf
Non-Equilibrium Green's Functions (NEGF) extension for the Gaussian software package using the gauopen Python interface
self-supervised-learning-for-medical-image-analysis
Code for "Evaluating Self-Supervised Learning in Medical Imaging: A Benchmark for Robustness, Generalizability, and Multi-Domain Impact". BMVC, 2025.
https://github.com/auroradysis/kerrp2p
KerrP2P is a software designed for forward ray tracing in Kerr spacetime. It is specifically tailored to efficiently calculate multiple null geodesics between designated "source" and "observer" points, locate apparent positions of the corresponding images, and quantify their shapes.
https://github.com/awesomecosmos/aayushi-verma-cv
Aayushi Verma's Curriculum Vitae.
https://github.com/baltic-coastal-monitoring-team/geopoint
GeoPOINT – Synthetic Point Generator for Geospatial Applications
https://github.com/bblodfon/pdac-efs-bench2024
Feature Selection benchmark and analysis on multi-omics PDAC datasets
code_spc_ecog_stn_speech
Sample code for: Spike-phase coupling of subthalamic neurons to posterior opercular cortex predicts speech sound accuracy
https://github.com/benny0323/deep-learning-based-mia-tasks
⭐[A Deep Survey] Paper List For Metal Artifact Reduction including traditional and deepl leanring based methods. ℱℯℯ𝓁 𝒻𝓇ℯℯ to contribute!
https://github.com/berenslab/llm-excess-vocab
Delving into LLM-assisted writing in biomedical publications through excess vocabulary
https://github.com/bin-cao/shapev
[JMI 2022 | Aggregate 2025] A package for searching equivalent values based on joined SHAP values
https://github.com/bio-rsg/oceancolour
Package of custom functions for remote sensing data analysis
https://github.com/bioconductor/bioconductor-training
Bioconductor teaching and education committee
https://github.com/biodataanalysisgroup/virtual-tutorial-perturbation-modelling
https://github.com/bioinfomachinelearning/multicom4
The MULTICOM4 protein structure prediction system developed by the Bioinformatics and Machine Learning Lab at the University of Missouri - Columbia
https://github.com/compiler-campusminden/cb-vorlesung-bachelor-w25
Lecture "Compilerbau" (B.Sc.) (Winter 2025/26)
https://github.com/biolink/resource-ingest-guide-schema
A LinkML schema for describing the scope, rationale, and modeling approach for ingesting content from a single source.
https://github.com/bioscan-ml/barcodebert
A pre-trained representation from a transformers model for inference on insect DNA barcoding data.
https://github.com/bodenmillergroup/imcdataanalysis
R based workflow for multiplexed imaging data
https://github.com/boothgroup/vayesta
A Python package for wave function-based quantum embedding
https://github.com/bootphon/speech-map
Mean Average Precision over words or n-grams with speech features
https://github.com/bozenne/article-netbenefit-correction
Code and software for the article "Correcting the bias of the net benefit estimator due to right-censored observations" published in biometrical (link: https://doi.org/10.1002/bimj.202000001 ).
https://github.com/brainets/hosi_infogain
Script for "Higher-order and distributed synergistic functional interactions encode information gain in goal-directed learning"
https://github.com/brainglobe/brainglobe-template-builder
Build unbiased anatomical templates from individual images
precisecaller
A complete, scalable, easy-to-use, open-source platform for genomic variant detection in Oncology and Precision Medicine
desirna
State of the art software for RNA sequence design. The first to solve the Eterna benchmark!
math-base-special-nanminf
Return the minimum value of two single-precision floating-point numbers, ignoring NaN.
https://github.com/broadinstitute/profiling-resistance-mechanisms
Predicting pharmacodynamic responses to cancer drugs using cell morphology
https://github.com/broadinstitute/pbs-analysis
Scripts for analyzing ChIP-seq and related datatypes with binning and PBS
xtant-3_coupling_data
Two-temperature model (TTM) parameters (G, Ce, K) calculated with XTANT-3
https://github.com/brugr9/uepluginvolumecreator
Unreal Engine Plugin: Volume Creator – Documentation
https://github.com/bueler/glacier-fe-estimate
extend the Falk technique to Stokes glacier models of surface evolution
https://github.com/cair/tsetlinmachine
Code and datasets for the Tsetlin Machine