GitHub
Pandarus
Pandarus: GIS toolkit for regionalized life cycle assessment - Published in JOSS (2017)
FNFT
FNFT: A Software Library for Computing Nonlinear Fourier Transforms - Published in JOSS (2018)
cartoee
cartoee: Publication quality maps using Earth Engine - Published in JOSS (2019)
MatD^3^
MatD^3^: A Database and Online Presentation Package for Research Data Supporting Materials Discovery, Design, and Dissemination - Published in JOSS (2020)
bioLEC
bioLEC: A Python package to measure Landscape Elevational Connectivity - Published in JOSS (2019)
ampscan
ampscan: A lightweight Python package for shape analysis of prosthetics and orthotics - Published in JOSS (2020)
skipTrack
skipTrack: An R package for Identifying Skips in Self-Tracked Mobile Menstrual Cycle Data - Published in JOSS (2024)
straditize
straditize: Digitizing stratigraphic diagrams - Published in JOSS (2019)
egtplot
egtplot: A Python Package for Three-Strategy Evolutionary Games - Published in JOSS (2018)
ExaFMM
ExaFMM: a high-performance fast multipole method library with C++ and Python interfaces - Published in JOSS (2021)
IDCeMPy
IDCeMPy: Python Package for Inflated Discrete Choice Models - Published in JOSS (2021)
helios
helios: An R package to process heating and cooling degrees for GCAM - Published in JOSS (2024)
SimuPy Flight Vehicle Toolkit
SimuPy Flight Vehicle Toolkit - Published in JOSS (2022)
hashin_shtrikman_mp: a package for the optimal design and discovery of multi-phase composite materials
hashin_shtrikman_mp: a package for the optimal design and discovery of multi-phase composite materials - Published in JOSS (2025)
pypillometry
pypillometry: A Python package for pupillometric analyses - Published in JOSS (2020)
FEST-3D
FEST-3D: Finite-volume Explicit STructured 3-Dimensional solver - Published in JOSS (2020)
The SuiteSparse Matrix Collection Website Interface
The SuiteSparse Matrix Collection Website Interface - Published in JOSS (2019)
geocat-comp
GeoCAT-comp provides implementations of computational functions for operating on geosciences data. Many of these functions originated in NCL and were translated into Python.
flusight
flusight: interactive visualizations for infectious disease forecasts - Published in JOSS (2017)
Scowl
Scowl: a Scala DSL for programming with the OWL API - Published in JOSS (2016)
RHRT
RHRT: An R package to assess Heart Rate Turbulence - Published in JOSS (2021)
ticktack
ticktack: A Python package for carbon box modelling - Published in JOSS (2023)
highlightHTML
highlightHTML: CSS Formatting of R Markdown Documents - Published in JOSS (2018)
LaMa
LaMa: a thematic labelling web application - Published in JOSS (2023)
Makie.jl
Makie.jl: Flexible high-performance data visualization for Julia - Published in JOSS (2021)
Vizumap
Vizumap: an R package for visualising uncertainty in spatial data - Published in JOSS (2021)
Simulation Decomposition in Python
Simulation Decomposition in Python - Published in JOSS (2024)
easyaccess
easyaccess: Enhanced SQL command line interpreter for astronomical surveys - Published in JOSS (2019)
vcftoolz
vcftoolz: a Python package for comparing and evaluating Variant Call Format files. - Published in JOSS (2019)
Bruno
Bruno: A Julia package for simulation, financial asset pricing and delta hedging - Published in JOSS (2023)
Sourcepredict
Sourcepredict: Prediction of metagenomic sample sources using dimension reduction followed by machine learning classification - Published in JOSS (2019)
tempodisco
tempodisco: an R package for temporal discounting - Published in JOSS (2025)
eva3dm
eva3dm: A R-package for model evaluation of 3D weather and air quality models - Published in JOSS (2025)
Radial Interstices Enable Speedy Low-volume Imaging
Radial Interstices Enable Speedy Low-volume Imaging - Published in JOSS (2021)
CESAR-P
CESAR-P: A dynamic urban building energy simulation tool - Published in JOSS (2022)
rfsed
rfsed: Receiver function analysis and dealing with sediment effects - Published in JOSS (2024)
RNMC
RNMC: kinetic Monte Carlo implementations for complex reaction networks - Published in JOSS (2024)
ETHOS.PeNALPS
ETHOS.PeNALPS: A Tool for the Load Profile Simulation of Industrial Processes Based on a Material Flow Simulation - Published in JOSS (2024)
RSeqAn
RSeqAn: Headers and wrappers for the SeqAn library in R - Published in JOSS (2019)
CosmicProfiles
CosmicProfiles: A Python package for radial profiling of finitely sampled dark matter halos and galaxies - Published in JOSS (2023)
Syd
Syd: A package for making interactive data visualizations in python - Published in JOSS (2025)
SneakerNet
SneakerNet: A modular quality assurance and quality check workflow for primary genomic and metagenomic read data - Published in JOSS (2021)
netroles
netroles: A Java library for role equivalence analysis in networks - Published in JOSS (2024)
MassMine
MassMine: Your Access To Data - Published in JOSS (2016)
Sepia, a taxonomy oriented read classifier in Rust
Sepia, a taxonomy oriented read classifier in Rust - Published in JOSS (2021)
COLNA
COLNA: A Python Package to Analyze Complex, Linear Networks - Published in JOSS (2020)
PYroMat
PYroMat: A Python package for thermodynamic properties - Published in JOSS (2022)
Semi-Automatic Classification Plugin
Semi-Automatic Classification Plugin: A Python tool for the download and processing of remote sensing images in QGIS - Published in JOSS (2021)
mmrefpoints
mmrefpoints: Projecting long-term marine mammal abundance with bycatch - Published in JOSS (2022)
PsiRESP
PsiRESP: calculating RESP charges with Psi4 - Published in JOSS (2022)
TTLocVis
TTLocVis: A Twitter Topic Location Visualization Package - Published in JOSS (2020)
rTASSEL
rTASSEL: An R interface to TASSEL for analyzing genomic diversity - Published in JOSS (2022)
ThermoFun
ThermoFun: A C++/Python library for computing standard thermodynamic properties of substances and reactions across wide ranges of temperatures and pressures - Published in JOSS (2023)
Scarlet
Scarlet: Scalable Anytime Algorithms for Learning Fragments of Linear Temporal Logic - Published in JOSS (2024)
Scyland3D
Scyland3D: Processing 3D landmarks - Published in JOSS (2020)
chloroExtractor
chloroExtractor: extraction and assembly of the chloroplast genome from whole genome shotgun data - Published in JOSS (2018)
Magicwand
Magicwand: A platform to provide high-quality, reliable, and reproducible data sets for low-and-slow DDoS attacks. - Published in JOSS (2021)
tightbinder
tightbinder: A Python package for semi-empirical tight-binding models of crystalline and disordered solids - Published in JOSS (2024)
WhaleMap
WhaleMap: a tool to collate and display whale survey results in near real-time - Published in JOSS (2021)
exoTEDRF
exoTEDRF: An EXOplanet Transit and Eclipse Data Reduction Framework - Published in JOSS (2024)
DNAtools
DNAtools: Tools for Analysing Forensic Genetic DNA Data - Published in JOSS (2020)
lintsampler
lintsampler: Easy random sampling via linear interpolation - Published in JOSS (2024)
MetaCast
MetaCast: A package for broadCASTing epidemiological and ecological models over META-populations. - Published in JOSS (2024)
ComFiT
ComFiT: a Python library for computational field theory with topological defects - Published in JOSS (2024)
DistributedSparseGrids.jl
DistributedSparseGrids.jl: A Julia library implementing an Adaptive Sparse Grid collocation method - Published in JOSS (2023)
Disimpy
Disimpy: A massively parallel Monte Carlo simulator for generating diffusion-weighted MRI data in Python - Published in JOSS (2020)
activAnalyzer
activAnalyzer: An R Shiny app to analyse ActiGraph accelerometer data and to implement the use of the PROactive Physical Activity in COPD instruments - Published in JOSS (2022)
deepCR
deepCR: Cosmic Ray Rejection with Deep Learning - Published in JOSS (2019)
Dimensionally Aligned Signal Projection Algorithms Library
Dimensionally Aligned Signal Projection Algorithms Library - Published in JOSS (2024)
mamonca
mamonca: magnetic Monte Carlo code - Published in JOSS (2024)
Rainbow
Rainbow: Automated Air-Liquid Interface Cell Culture Analysis Using Deep Optical Flow - Published in JOSS (2022)
wbacon
wbacon: Weighted BACON algorithms for multivariate outlier nomination (detection) and robust linear regression - Published in JOSS (2021)
PyBox
PyBox: An automated box-model generator for atmospheric chemistry and aerosol simulations. - Published in JOSS (2018)
PolSAR tools: A QGIS plugin for generating SAR descriptors
PolSAR tools: A QGIS plugin for generating SAR descriptors - Published in JOSS (2021)
ClassiPyGRB
ClassiPyGRB: Machine Learning-Based Classification and Visualization of Gamma Ray Bursts using t-SNE - Published in JOSS (2024)
ENASearch
ENASearch: A Python library for interacting with ENA's API - Published in JOSS (2017)
Riroriro
Riroriro: Simulating gravitational waves and evaluating their detectability in Python - Published in JOSS (2021)
special
special: A Python package for the spectral characterization of directly imaged low-mass companions - Published in JOSS (2022)
Back to sequences
Back to sequences: Find the origin of k-mers - Published in JOSS (2024)
pfsspy
pfsspy: A Python package for potential field source surface modelling - Published in JOSS (2020)
SeisModels.jl
SeisModels.jl: A Julia package for models of the Earth's interior - Published in JOSS (2020)
POSEIDON
POSEIDON: A Multidimensional Atmospheric Retrieval Code for Exoplanet Spectra - Published in JOSS (2023)
pycoxmunk
pycoxmunk: A python package for computing sea surface reflectance - Published in JOSS (2023)
pygwb
pygwb: a Python-based library for gravitational-wave background searches - Published in JOSS (2024)
EDO.js
EDO.js: A comprehensive JavaScript library for interaction with musical set theory in any tuning - Published in JOSS (2021)
dlmmc
dlmmc: Dynamical linear model regression for atmospheric time-series analysis - Published in JOSS (2019)
OT_Analysis
OT_Analysis: a software for rich analysis of force curves when probing living cells with optical tweezers - Published in JOSS (2023)
Eaglescope
Eaglescope: an interactive visualization and cohort selection tool for biomedical data exploration. - Published in JOSS (2024)
UnlockNN
UnlockNN: Uncertainty quantification for neural network models of chemical systems - Published in JOSS (2022)
iTensor
iTensor: An R package for independent component analysis-based matrix/tensor decomposition - Published in JOSS (2023)
seismolab
seismolab: A Python package for analyzing space-based observations of variable stars - Published in JOSS (2024)
ambrosia
ambrosia: An R package for calculating and analyzing food demand that is responsive to changing incomes and prices - Published in JOSS (2021)
udpPacketManager
udpPacketManager: An International LOFAR Station Data (Pre-)Processor - Published in JOSS (2024)
Ensight4Matlab
Ensight4Matlab: read, process, and write files in EnSight® Gold format from C++ or MATLAB® - Published in JOSS (2017)