https://github.com/cidgoh/nf-ncov-voc • Science 49%

A Nextflow wrapped workflow for generating the mutation profiles of SARS-CoV-2 or Mpox genomes. Workflow is developed in collaboration with VIRUS-MVP (https://github.com/cidgoh/VIRUS-MVP) which can be used to visualize the mutation profiles and functional annotations.

autocv • Science 44%

clean CV LaTex template with GitHub Actions that compile and publish new changes

palmer_penguins • Science 44%

https://github.com/climate-service-center/dacstore • Science 49%

Acceptance analysis DACStorE

https://github.com/climatecompatiblegrowth/geo-x-data-prep • Science 49%

Spatial data preparation tools for GeoH2 users.

https://github.com/clir-abvi-portal/clir-abvi-portal-aaslh • Science 44%

https://github.com/cmendl/rqcopt_hpc • Science 49%

HPC implementation of Riemannian quantum circuit optimization

https://github.com/coderefinery/testing • Science 57%

Automated testing - Preventing yourself and others from breaking your functioning code

https://github.com/coin-or/symphony • Science 49%

SYMPHONY is an open-source solver, callable library, and development framework for mixed-integer linear programs (MILPs) written in C with a number of unique features

https://github.com/comp-physics/meshfreetrixi.jl • Science 49%

Meshfree extension to Trixi using RBF-based numerics

https://github.com/compiler-campusminden/cpl-vorlesung-master-w25 • Science 44%

Lecture "Concepts of Programming Languages" (M.Sc.) (Winter 2025/26)

impurity • Science 44%

https://github.com/computational-biology-aachen/synechocystis-photosynthesis-2024 • Science 49%

A mathematical model of photosynthetic electron transport in Synechocystis sp. PCC 6803

https://github.com/conect2ai/sbai2025-tensorflores • Science 49%

https://github.com/corybrunson/ordr • Science 49%

manage ordinations and render biplots in a tidyverse workflow

https://github.com/cosbidev/ostransformer • Science 49%

Official implementation for the paper ``A Deep Learning Approach for Overall Survival Prediction in Lung Cancer with Missing Values´´

https://github.com/cosmo-pop/flowfusion • Science 54%

Generative modelling using diffusion models and flow-matching

https://github.com/cpanse/fgczqcms • Science 46%

https://github.com/crsu-apps/popviz • Science 49%

A visualisation package to show absolute effects as a proportion of people

swirl • Science 54%

Structural Wind-borne debris Impact Risk assessment Library

https://github.com/csinva/clinical-rule-development • Science 49%

Building and vetting clinical decision rules.

https://github.com/gssi/smartcitykpi-result-visualizer • Science 13%

KPI Visualization Component

https://github.com/cthoyt/wikidata-client • Science 54%

https://github.com/ctu-vras/monoforce • Science 49%

[IROS 2024] [ICML 2024 Workshop Differentiable Almost Everything] MonoForce: Learnable Image-conditioned Physics Engine

number-float64-base-assert-is-same-value-zero • Science 44%

Test if two double-precision floating-point numbers are the same value.

assignment1 • Science 44%

corporate-governance-and-asset-pricing • Science 44%

This solves a nonlinear stochastic singular control problem related to corporate governance

https://github.com/cwwhitney/urban_school_gardens • Science 49%

Decision model on investment in urban school gardens for food environment outcomes (Hanoi, Vietnam case)

https://github.com/cyclotronresearchcentre/bidsme_containerisation • Science 44%

Bringing BIDSme into a container, then NeuroDesk

viromics2025 • Science 44%

https://github.com/danielathome19/engram-neural-network • Science 49%

tensorflow-engram: A Python package for Engram Neural Networks, adding biologically-inspired Hebbian memory and engram layers to TensorFlow/Keras models, supporting memory traces, plasticity, attention, and sparsity for neural sequence learning.

https://github.com/danielenricocahall/danielenricocahall • Science 49%

https://github.com/danielenricocahall/keras-unet • Science 49%

Implementation of U-Net in Keras

https://github.com/data-science-in-mechanical-engineering/mixed_precision_for_jax • Science 57%

A repository for Mixed Precision Training in JAX based on Equinox.

https://github.com/dataunitylab/jsonoid-discovery • Science 57%

Distributed JSON schema discovery

pipeable • Science 44%

A domain specific language for building functionally composable steps.

Graphem - JAX: Node Influence Maximization via Geometric Embeddings • Science 98%

Graphem - JAX: Node Influence Maximization via Geometric Embeddings - Published in JOSS (2025)

Pi4Micronaut: A Java Library for IoT Research Instruments on Raspberry Pi • Science 93%

Pi4Micronaut: A Java Library for IoT Research Instruments on Raspberry Pi - Published in JOSS (2025)

@stdlib/math-base-special-factorial2 • Science 44%

Evaluate the double factorial.

math-base-special-sinf • Science 44%

Compute the sine of a single-precision floating-point number (in radians).

https://github.com/gssi/mmrefactorings-catalog • Science 13%

zbinfigs • Science 44%

Tools to classify scholarly articles based on extracted figures

@stdlib/array-empty-like • Science 44%

Create an uninitialized array having the same length and data type as a provided array.

https://github.com/gssi/tinkerforge.acceleo.generator • Science 13%

Tinkerforge Acceleo Code Generator

SOFIA: A Python Library for High-Quality 2D Triangular Mesh Adaptation • Science 92%

SOFIA: A Python Library for High-Quality 2D Triangular Mesh Adaptation - Published in JOSS (2026)

yolo-sign • Science 44%

kuch bho

quantum-optical-network • Science 54%

A quantum optical setup to classify states using multiple hidden neurons.

https://github.com/gssi/cobol-map • Science 26%

qsort R package — Peer-reviewed • Science 93%

qsort R package: A New Tool for Scoring Q-sort Data - Published in JOSS (2018)

complexity-in-complexity • Science 54%

Code for "Complexity in Complexity: Understanding Visual Complexity Through Structure, Color, and Surprise". CogSci, 2025 & ICLR Re-Align Workshop, 2025.

patch-based-diffusion-model-for-multiplicative-noise-removal • Science 44%

quantms • Science 67%

Quantitative mass spectrometry workflow. Currently supports proteomics experiments with complex experimental designs for DDA-LFQ, DDA-Isobaric and DIA-LFQ quantification.

drl-nav • Science 44%

Deep Reinforcement Learning based autonomous navigation in realistic simulation environments.

nook-iin • Science 49%

Programa de Tesis, determina celdas primitivas para heteroestructuras 2D multicapa

pye-plus • Science 57%

Multi-Criteria Decision Making (MCDM) Framework for Building Energy Systems with Expedited Computation using Machine Learning (ML) Techniques

https://github.com/gssi/momot-chaining-coverage-toy-examples • Science 13%

oxo-pharo • Science 44%

Tic-tac-toe / noughts and crosses with minimax done in Pharo Smalltalk

candela • Science 57%

A project developing a novel framework to enhance Large Language Model (LLM) reliability and transparency using a human-readable directive scaffold and blockchain anchoring for verifiable behaviour governance.

https://github.com/gssi/apriporta • Science 26%

OrbDot — Peer-reviewed • Science 93%

OrbDot: A Python package for studying the secular evolution of exoplanet orbits - Published in JOSS (2025)

medicai • Science 44%

AI Toolkit for Healthcare Imaging in Keras 3

badtobetter • Science 44%

Better computational practice - Bad to better

ginjax — Peer-reviewed • Science 93%

ginjax: E(d)-Equivariant CNN for Tensor Images - Published in JOSS (2025)

GraphCalc — Peer-reviewed • Science 93%

GraphCalc: A Python Package for Computing Graph Invariants in Automated Conjecturing Systems - Published in JOSS (2025)

amdtowerdemo • Science 44%

scmorph — Peer-reviewed • Science 98%

scmorph: a Python package for analysing single-cell morphological profiles - Published in JOSS (2025)

slap2-utils — Peer-reviewed • Science 93%

slap2-utils: Tools for Processing SLAP2 Data - Published in JOSS (2025)

CaNS-Fizzy — Peer-reviewed • Science 93%

CaNS-Fizzy: A GPU-accelerated finite difference solver for turbulent two-phase flows - Published in JOSS (2025)

TMLE.jl — Peer-reviewed • Science 98%

TMLE.jl: Targeted Minimum Loss-Based Estimation in Julia - Published in JOSS (2025)

MCSimMod — Peer-reviewed • Science 93%

MCSimMod: An R Package for Working with Ordinary Differential Equation Models Encoded in the MCSim Model Specification Language - Published in JOSS (2025)

Snowdrop — Peer-reviewed • Science 93%

Snowdrop: Python Package for DSGE Modeling - Published in JOSS (2025)

smolyax — Peer-reviewed • Science 98%

smolyax: a high-performance implementation of the Smolyak interpolation operator in JAX - Published in JOSS (2025)

nf-core-strainsort • Science 44%

Parallel-CDM — Peer-reviewed • Science 98%

Parallel-CDM: Parallel Implementation of Continuum Damage Mechanics Simulations using FEM and MATLAB - Published in JOSS (2025)

ChemInformant — Peer-reviewed • Science 98%

ChemInformant: A Robust and Workflow-Centric Python Client for High-Throughput PubChem Access - Published in JOSS (2025)

https://github.com/lynkerintel/lcsb-bootstrap-old • Science 13%

Bootstrap for Lynker Cloud Sandbox

SDA — Peer-reviewed • Science 93%

SDA: a symbolic differential algebra package in C++ - Published in JOSS (2025)

voice — Peer-reviewed • Science 93%

voice: A Comprehensive R Package for Audio Analysis - Published in JOSS (2025)

BayesReconPy — Peer-reviewed • Science 93%

BayesReconPy: A Python package for forecast reconciliation - Published in JOSS (2025)

SOAP — Peer-reviewed • Science 93%

SOAP: A Python Package for Calculating the Properties of Galaxies and Halos Formed in Cosmological Simulations - Published in JOSS (2025)

PolytopeWalk — Peer-reviewed • Science 93%

PolytopeWalk: Sparse MCMC Sampling over Polytopes - Published in JOSS (2025)

The Population Synthesis Toolkit (PST) Python Library — Peer-reviewed • Science 98%

The Population Synthesis Toolkit (PST) Python Library - Published in JOSS (2025)

PyStarshade — Peer-reviewed • Science 93%

PyStarshade: Simulating High-Contrast Imaging of Exoplanets with Starshades - Published in JOSS (2025)

PAAT — Peer-reviewed • Science 93%

PAAT: Physical Activity Analysis Toolbox for the analysis of hip-worn raw accelerometer data in Python - Published in JOSS (2025)

https://github.com/gssi/astra-project • Science 26%

The ASTRA Scheduler Tool, a Model-Driven Engineering (MDE)-based solution for designing, validating, and optimizing task schedules in safety-critical satellite systems. The tool supports Digital Twin-based runtime adaptation through scheduling reconfiguration and telemetry-driven monitoring.

EvoVis — Peer-reviewed • Science 67%

EvoVis: Dashboard for Visualizing Evolutionary Neural Architecture Search Algorithms - Published in JOSS (2025)

ExcelToShiny — Peer-reviewed • Science 93%

ExcelToShiny: An R Package for Automating Shiny Dashboard Creation from Excel Templates - Published in JOSS (2025)

VectoRose — Peer-reviewed • Science 98%

VectoRose: A new package for analysing and visualising 3D non-unit vectors in Python - Published in JOSS (2025)

bisonpicsuite — Peer-reviewed • Science 93%

bisonpicsuite: A set of R packages to estimate wood bison population parameters from remote camera data. - Published in JOSS (2025)

gaia — Peer-reviewed • Science 100%

gaia: An R package to estimate crop yield responses to temperature and precipitation - Published in JOSS (2025)

isoslam • Science 44%

downloadvepcache • Science 57%

Download VEP cache for annotation-cache

seqinspector • Science 44%

QC pipeline to inspect your sequences

Lighter — Peer-reviewed • Science 93%

Lighter: Configuration-Driven Deep Learning - Published in JOSS (2025)

3DQLayers — Peer-reviewed • Science 98%

3DQLayers: Volumetric Layer Based Analysis for Quantitative Renal MRI - Published in JOSS (2025)

TurboFlow — Peer-reviewed • Science 93%

TurboFlow: Meanline Modelling of Axial Turbines - Published in JOSS (2025)

Felino: Extension of an open-source phase-field framework to geomaterial fracture • Science 87%

Felino: Extension of an open-source phase-field framework to geomaterial fracture - Published in JOSS (2026)

PointClouds.jl — Peer-reviewed • Science 96%

PointClouds.jl: Fast & flexible processing of lidar data - Published in JOSS (2025)

dpest — Peer-reviewed • Science 98%

dpest: Streamlining Creation of PEST input files for DSSAT Crop Model Calibration - Published in JOSS (2025)

https://github.com/gssi/company2crm • Science 13%

This repo contains all the migration strategies for the evolution of Company Metamodel