Tulip • Rank 12.4 • Science 67%

Interior-point solver in pure Julia

grpc4bmi • Rank 12.4 • Science 67%

gRPC wrapper for model with a Basic modeling interface

pygaps • Rank 12.4 • Science 67%

A framework for processing adsorption data and isotherm fitting

stochopy • Rank 12.4 • Science 67%

Python library for stochastic numerical optimization

dimensio • Rank 2.4 • Science 77%

Multivariate Data Analysis - :exclamation: This is a read-only mirror from https://codeberg.org/tesselle/dimensio

pyttb • Rank 12.4 • Science 67%

Python Tensor Toolbox

wrf-python • Rank 17.4 • Science 62%

A collection of diagnostic and interpolation routines for use with output from the Weather Research and Forecasting (WRF-ARW) Model.

biomass • Rank 12.4 • Science 67%

A Python Framework for Modeling and Analysis of Signaling Systems

joinem • Rank 12.4 • Science 67%

CLI for fast, flexbile concatenation of tabular data using polars

https://github.com/astropy/sphinx-automodapi • Rank 20.4 • Science 59%

Sphinx extension for generating API documentation

scitree • Rank 12.4 • Science 67%

Scitree is a recursive directory listing tool optimized for science

cntext • Rank 12.3 • Science 67%

text analysis, supporting multiple methods including word count, readability, document similarity, sentiment analysis, Word2Vec/GloVe, and Large Language Models (LLMs).文本分析包，支持字数统计、可读性、文档相似度、情感分析在内的多种文本分析方法。

bigcodebench • Rank 15.3 • Science 64%

[ICLR'25] BigCodeBench: Benchmarking Code Generation Towards AGI

asreview-insights • Rank 12.3 • Science 67%

Tools such as plots and metrics to analyze (simulated) reviews for ASReview LAB

Metal • Rank 15.3 • Science 64%

Metal programming in Julia

solarmach • Rank 12.3 • Science 67%

Python package of the multi-spacecraft longitudinal configuration plotter Solar-MACH

iris-esmf-regrid • Rank 12.3 • Science 67%

A collection of structured and unstructured ESMF regridding schemes for Iris.

QuantumOptics • Rank 15.3 • Science 64%

Library for the numerical simulation of closed as well as open quantum systems.

stars-carla-experiments • Rank 2.3 • Science 77%

This repository analyzes driving data recorded with the Carla Simulator using the STARS framework.

mantra • Rank 2.3 • Science 77%

Home of the "MountAiN glacier Transient snowline Retrieval Algorithm", a Google Earth Engine tool to measure the average altitude of the snow-ice boundary for very many glaciers.

dao-analyzer • Rank 12.3 • Science 67%

DAO visualization tool

braindecode • Rank 20.3 • Science 59%

Deep learning software to decode EEG, ECG or MEG signals

pydap • Rank 20.3 • Science 59%

A Python library implementing the Data Access Protocol (DAP, aka OPeNDAP).

gtfsort • Rank 12.3 • Science 67%

a lexicographically-based GTF/GFF sorter

laonlp • Rank 12.3 • Science 67%

Lao language NLP

pyscipopt • Rank 12.3 • Science 67%

Python interface for the SCIP Optimization Suite

Rcpp • Rank 30.3 • Science 49%

Seamless R and C++ Integration

gpt-researcher • Rank 15.2 • Science 64%

LLM based autonomous agent that conducts deep local and web research on any topic and generates a long report with citations.

butter2d • Rank 12.2 • Science 67%

Butterworth filter for spatial frequencies on images. Includes a WASM demo

gseapy • Rank 20.2 • Science 59%

Gene Set Enrichment Analysis in Python

scikit-surgerycore • Rank 12.2 • Science 67%

SciKit-SurgeryCore implements algorithms and tools that are common to all SciKit-Surgery packages

cashocs • Rank 12.2 • Science 67%

computational adjoint-based shape optimization and optimal control software for python

awesome-neural-cellular-automata • Rank 2.2 • Science 77%

A list of paper and resources regarding Neural Cellular Automata

dbcanlight • Rank 2.2 • Science 77%

A lightweight rewrite of run_dbcan for better multithread performance

rdesrap_mms • Rank 2.2 • Science 77%

Reproducible analytical pipeline (RAP) for R discrete-event simulation (DES) implementing an M/M/s queueing model.

ManifoldsBase • Rank 12.2 • Science 67%

Basic interface for manifolds in Julia

mmengine • Rank 25.2 • Science 54%

OpenMMLab Foundational Library for Training Deep Learning Models

dynesty • Rank 20.2 • Science 59%

Dynamic Nested Sampling package for computing Bayesian posteriors and evidences

efp-seq_browser • Rank 4.2 • Science 75%

An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictographic" (eFP) based on its RPKM expression level.

BioStructures • Rank 12.1 • Science 67%

A Julia package to read, write and manipulate macromolecular structures

cellsium • Rank 4.1 • Science 75%

CellSium – Cell Simulator for microfluidic microcolonies

pygfunction • Rank 15.1 • Science 64%

An open-source toolbox for the evaluation of thermal response factors (g-functions) of geothermal borehole fields.

deepwave • Rank 12.1 • Science 67%

Wave propagation modules for PyTorch.

muspy • Rank 15.1 • Science 64%

A toolkit for symbolic music generation

vehicle-lang • Rank 15.1 • Science 64%

A toolkit for enforcing logical specifications on neural networks

pgmpy • Rank 25.1 • Science 54%

Python library for building, learning, and reasoning with causal models.

permuta • Rank 12.1 • Science 67%

A native Python library for permutation pattern research

https://github.com/alleninstitute/sonata • Rank 12.1 • Science 67%

Collaboration between BBP and AIBS

webchem • Rank 20.1 • Science 59%

Chemical Information from the Web

tiny_qa_benchmark_pp • Rank 2.1 • Science 77%

Tiny QA Benchmark++ a micro-benchmark suite (52-item gold + on-demand multilingual synthetic packs), generator CLI, and CI-ready eval harness for ultra-fast LLM smoke-testing & regression-catching.

embomicrocom2 • Rank 2.1 • Science 77%

Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2024

jsbsim • Rank 20.1 • Science 59%

An open source flight dynamics & control software library

dill • Rank 33.1 • Science 46%

serialize all of Python

luigi • Rank 30.1 • Science 49%

Luigi is a Python module that helps you build complex pipelines of batch jobs. It handles dependency resolution, workflow management, visualization etc. It also comes with Hadoop support built in.

lightgbm • Rank 33.1 • Science 46%

A fast, distributed, high performance gradient boosting (GBT, GBDT, GBRT, GBM or MART) framework based on decision tree algorithms, used for ranking, classification and many other machine learning tasks.

spdl • Rank 15.0 • Science 64%

Scalable and Performant Data Loading

bcdi • Rank 12.0 • Science 67%

BCDI: tools for pre(post)-processing Bragg coherent X-ray diffraction imaging data

tasknet • Rank 12.0 • Science 67%

Easy modernBERT fine-tuning and multi-task learning

rabies • Rank 12.0 • Science 67%

fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/

batchtools — Peer-reviewed • Rank 20.0 • Science 59%

batchtools: Tools for R to work on batch systems - Published in JOSS (2017)

iree-base-compiler • Rank 25.0 • Science 54%

A retargetable MLIR-based machine learning compiler and runtime toolkit.

reaction-network • Rank 12.0 • Science 67%

Reaction Network is a Python package for predicting likely inorganic chemical reaction pathways using graph theoretical methods. Project led by @mattmcdermott (formerly at Berkeley Lab).

https://github.com/bytedance/protenix • Rank 20.0 • Science 59%

A trainable PyTorch reproduction of AlphaFold 3.

coniferest • Rank 12.0 • Science 67%

sqsgenerator • Rank 12.0 • Science 67%

A command line tool written in Python/C++ for finding optimized SQS structures

sarxarray • Rank 12.0 • Science 67%

Xarray extension for Synthetic Aperture Radar (SAR) data

haskell-language-server • Rank 25.0 • Science 54%

Official haskell ide support via language server (LSP). Successor of ghcide & haskell-ide-engine.

tesselle • Rank 1.9 • Science 77%

Easily Install and Load tesselle Packages - :exclamation: This is a read-only mirror from https://codeberg.org/tesselle/tesselle

pydaymet • Rank 11.9 • Science 67%

A part of HyRiver software stack for retrieving and post-processing climate data from the Daymet Webservice.

psyplot • Rank 11.9 • Science 67%

Python package for interactive data visualization

in-toto • Rank 24.9 • Science 54%

in-toto is a framework to protect supply chain integrity.

terrainbook • Rank 6.9 • Science 72%

"Computational modelling of terrains" book: source code + PDF

https://github.com/astropy/extension-helpers • Rank 19.9 • Science 59%

Helpers to assist with building Python packages with compiled C/Cython extensions

knitcitations • Rank 19.9 • Science 59%

:package: Generate citations for knitr markdown and html files

casadi • Rank 24.9 • Science 54%

CasADi is a symbolic framework for numeric optimization implementing automatic differentiation in forward and reverse modes on sparse matrix-valued computational graphs. It supports self-contained C-code generation and interfaces state-of-the-art codes such as SUNDIALS, IPOPT etc. It can be used from C++, Python or Matlab/Octave.

fteikpy • Rank 11.9 • Science 67%

Accurate Eikonal solver for Python

adapters • Rank 24.9 • Science 54%

A Unified Library for Parameter-Efficient and Modular Transfer Learning

deerlab • Rank 11.9 • Science 67%

Python package for data analysis for dipolar EPR spectroscopy

pycrystal • Rank 11.9 • Science 67%

Utilities for ab initio modeling suite CRYSTAL, developed in Turin University

ap-features • Rank 11.9 • Science 67%

Package to compute features of traces from action potential models

VoronoiFVM • Rank 11.8 • Science 67%

Solution of nonlinear multiphysics partial differential equation systems using the Voronoi finite volume method

bluepymm • Rank 11.8 • Science 67%

Blue Brain Python Cell Model Management

sxs • Rank 14.8 • Science 64%

Python code for manipulating data from the SXS collaboration

egttools • Rank 11.8 • Science 67%

Toolbox for Evolutionary Game Theory.

etsi_its_messages • Rank 6.8 • Science 72%

ROS / ROS 2 Support for ETSI ITS Messages for V2X Communication

sustainable-communities-tracker • Rank 1.8 • Science 77%

sustainable-communities-tracker

the-plunging-flow-by-3d-les • Rank 1.8 • Science 77%

The Plunging of Hyperpycnal Plumes on Tilted Bed by Three-Dimensional Large-Eddy Simulations

lyoluminescenceapp • Rank 1.8 • Science 77%

Lyoluminescence Shiny App

toe_tmin-tmax • Rank 1.8 • Science 77%

Timing of emergence of CONUS summertime temperatures

zividomelive • Rank 1.8 • Science 77%

A Processing Library to facilitates the creation of immersive live visual experiences for fulldome projections.

turtle-fecundity • Rank 1.8 • Science 77%

Paper - Scaling of sea turtle reproduction reconciles theory and conservation strategies at the global scale

doi-check-app • Rank 1.8 • Science 77%

A GitHub app that checks for DOI links in the README.md file of a repository and warns the user if no DOI is found.

rrtmgp-data • Rank 1.8 • Science 77%

Data for RRTMGP gas optics; compatible cloud and aerosol optics

tfer-pma • Rank 1.8 • Science 77%

Code in multiple languages to evaluate the transfer function for particle mass analyzers (including the APM and CPMA), including a web app and Matlab version (cf. github.com/tsipkens/mat-tfer-pma).

seekpath • Rank 19.8 • Science 59%

A module to obtain and visualize k-vector coefficients and obtain band paths in the Brillouin zone of crystal structures

lifewatch-pypam • Rank 11.8 • Science 67%

Python Passive Acoustic Analysis tool for Passive Acoustic Monitoring (PAM)

drugbank-downloader • Rank 11.8 • Science 67%

Don't worry about DrugBank licensing - write code that knows how to download it automatically

igraph • Rank 14.8 • Science 64%

Library for the analysis of networks

mdftracks • Rank 11.7 • Science 67%

R package for reading and writing MTrackJ Data Format (.mdf) files

eurostat • Rank 19.7 • Science 59%

R tools for Eurostat data